Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0927 ATGGCAATTCACAAGTTTCTCTTAGCCATTTACATCTTAGGTTCAGCCCTGGCTCATTTCTCACTAGCTCAGAGCTCCCCCCAAGACTATGTGGACGCCCACAATGCTGCACGGGCACAGGTAGGAGTGCAGCCCATCACATGGAATGAGACAGTCGCAGCCTACGCCAGGAGATATGCTAGTAGCCGGGTTGCTGCACGTTGCAGCATGGAGAATTCAGGAGGGCCGTACGGAGAGAACCTTGCTAAAGTGTATGGTACTTCAGTGTCAGGTTCAGATGCAGTCGAGTTTTGGGTAACTGAGAAGCCAAACTATGACTACAACTCCAACTCATGTGTTGGTGGAGAGTGCCTGCATTATACCCAGATTGTTTGGGGTGACTCACTTTATCTTGGGTGTGCTAGCGTTCATTGCAAAAATGGATGGTGGTTCATCACCTGTAACTATCATCCTCCTGGAAATATGGAGGGGCAGCGTCCTTATTAG 486 0.4938 MAIHKFLLAIYILGSALAHFSLAQSSPQDYVDAHNAARAQVGVQPITWNETVAAYARRYASSRVAARCSMENSGGPYGENLAKVYGTSVSGSDAVEFWVTEKPNYDYNSNSCVGGECLHYTQIVWGDSLYLGCASVHCKNGWWFITCNYHPPGNMEGQRPY* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0927 161 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Vvi3g0927 161 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Vvi3g0927 161 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Vvi3g0927 161 PRINTS Allergen V5/Tpx-1 family signature 144 157 IPR001283 -
Vvi3g0927 161 Pfam Cysteine-rich secretory protein family 31 149 IPR014044 -
Vvi3g0927 161 SUPERFAMILY PR-1-like 20 161 IPR035940 -
Vvi3g0927 161 Gene3D CAP 25 161 IPR035940 -
Vvi3g0927 161 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 29 158 IPR001283 -
Vvi3g0927 161 CDD CAP_PR-1 27 161 - -
Vvi3g0927 161 ProSitePatterns CRISP family signature 2. 144 155 IPR018244 GO:0005576
Vvi3g0927 161 SMART SCP_3 25 157 IPR014044 -
Vvi3g0927 161 FunFam Putative pathogenesis-related protein 1 24 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0927 Vvi-Chr3 9337591 9338076 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0927 K13449 - vvi:100249795 334.339