Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0925 ATGGGGGACTACAATTTTGTTGTTGGTCAAGAGTTTGCTGATGTCAAGGCCTTCAGGAATGCAATCAAAGAAGCTGCAATTGCTCAACATTTTGAGCTTCGTATTATAAAAAGTGATTTAATCCGTTACTTTGCAAAGTGTGCAACTGAAGGTTGCCCATGGCGTATCCGTGCAGTTAAGCTTCCTAATGCTCCAACTTTCACTATTAGAAGCCTTGAGGGGACGCATACCTGTGGAAAAAATGCACAAAATGGGCATCATCAGGCTTCTGTAGATTGGATTGTGAGTTTCATAGAGGAACGACTGCGAGATAATATAAATTACAAACCAAAGGATATATTGCATGACATTCATAAACAATATGGGATCACTATACCTTATAAGCAAGCCTGGCGTGCTAAGGAGCGGGGGCTAGCGGCTATTTATGGCTCTTCTGAAGAAGGGTATTGCCTCCTTCCTGCATATTGTGAGGAAATAAAGAGAGCCAACCCTGGAAGTGTTGCGGAGGTGTTTACCAGTGGTGCAGATAACCGGTTTCAACGGCTTTTTGTTTCCTTTTACGCATCCATATATGGTTTTCTAAATGGTTGCTTGCCTATTGTTGGGCTTGGTGGAATCCAGCTCAAGAGCAAATACCTTGGCACCTTACTTTCAGCCACTTCTTTTGACGCTGATGGTGGGTTGTTTCCACTTGCATTTGGTGTTGTTGATGCAGAAAATGATGAGAGCTGGATGTGGTTCCTGTCAGAGTTACGAAAGGCACTAGAAATGAACACAGAGAATGTACCTCAACTCACATTTTTATCGGATGGACAGAAGGGCATCCAAGATGCTGTAAAGAGGAAATTCCCAACTTCTTCCCATGCTTTCTGTATGCGCCACTTGAGTGAAAGCATTGGCAAAGAGTTTAAGAACTCAAGGCTTGTTCATCTTCTATGGAAAGCAGCATATGCCACAACTACCATTGCTTTTAAAGAAAAAATGGCAGAGATTGAGGAGGTTTCTTCTGAAGCAGCCAAGTGGATTCAACAGTTTCCAACTTCCCGTTGGGCATTGGTGTATTTTGAAGGAACACGATATGGTCATCTCTCTTCAAATATTGAGGAATTCAATAAATGGATTCTTGAAGCACGGGAGCTGCCCATAATCCAGGTGATTGAGCAGATTCACAGTAAACTAATGGCTGAGTTTGAGGAGCGGCGTTTAAAGAGCAATTCATGGTTTTCAGTTTTAGCCCCATCAGCTGATAAGCGAATGATGGAGGCGATTGGCCGTGCATCAACATATCAAGTTCTTAGATCAGATGAAGTAGAATTTGAGGTTCTATCAGCCGAGCGATCAGACATTGTGAACATAGGGACTCAGTGCTGTTCCTGCCGTGATTGGCAACTCTATGGAATCCCATGCTCCCATGCTGTTGCAGCCCTCCTCTCATGTAGAAAAGATGTGTACGCATTTACAGAGAAGTGTTTCACTGTGGCAAGTTATCGTGCGGCATATTCAGAAGAGATACGCCCCATTCCCTGTAAAATAGAGTGGAGAAGAACAGTTGAGGCTCCTGTGGATGATGACACTCCAGTTGTGCGACCACCAAAGTTCCGTCGACCGCCAGGACGCCCTGAAAAGAAGCGAATATGCGTAGAGGATCTTAACAGGGAGAAGCATACAGTGCACTGTAGCCGGTGCAACCAAACTGGACATTACAAAACAACTTGCAAAGCAGATATTATGAAGAGCATAGAGCAGTTTTAG 1752 0.4384 MGDYNFVVGQEFADVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCATEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYKQAWRAKERGLAAIYGSSEEGYCLLPAYCEEIKRANPGSVAEVFTSGADNRFQRLFVSFYASIYGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDAENDESWMWFLSELRKALEMNTENVPQLTFLSDGQKGIQDAVKRKFPTSSHAFCMRHLSESIGKEFKNSRLVHLLWKAAYATTTIAFKEKMAEIEEVSSEAAKWIQQFPTSRWALVYFEGTRYGHLSSNIEEFNKWILEARELPIIQVIEQIHSKLMAEFEERRLKSNSWFSVLAPSADKRMMEAIGRASTYQVLRSDEVEFEVLSAERSDIVNIGTQCCSCRDWQLYGIPCSHAVAALLSCRKDVYAFTEKCFTVASYRAAYSEEIRPIPCKIEWRRTVEAPVDDDTPVVRPPKFRRPPGRPEKKRICVEDLNREKHTVHCSRCNQTGHYKTTCKADIMKSIEQF* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0925 583 ProSiteProfiles Zinc finger SWIM-type profile. 439 480 IPR007527 GO:0008270
Vvi3g0925 583 SMART 26again6 455 482 IPR006564 GO:0008270
Vvi3g0925 583 Pfam MULE transposase domain 209 296 IPR018289 -
Vvi3g0925 583 PANTHER POLYPROTEIN, PUTATIVE-RELATED 10 542 - -
Vvi3g0925 583 Pfam MuDR family transposase 5 69 IPR004332 -
Vvi3g0925 583 Pfam SWIM zinc finger 446 479 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0925 Vvi-Chr3 9310215 9311966 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0925 - - vvi:100253276 1171.76