Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0924 ATGTACTCTCTCATGTCTTCGCCTTCCATCTCTTCATCTTCCTCCTCCTTTTTAGGCCAAACCCACTTCGATTCCAGAAACCCAAATGCTTGCCTTCCCACAAAAGATAGTTGGATATGTAAATGTGTGGCAACACCTTCCACAGAGACGACTGCTCACACGACAAAGGTCTCTCGCAATGCAAATATGGCCAAACTTCAAGCTGGTTATTTGTTTCCAGAGATAGCCAGAAGAAGGTCAGCACACATGCTAAAGTACCCTGATGCACAAGTGATAAGCCTTGGAATTGGTGACACTACTGAGCCCATTCCAGAAGTTATAACTTCTGGTATGGCAAAGAAAGCACATGCATTGTCAACACTAGAGGGTTACAGTGGTTATGGAGCTGAACAAGGTGAAAAACAATTGAGAGCTGCAATTGCTTCGACCTTTTATGGTGACCTCAGCATAGAGGAAAGTGATATATTTGTCTCTGATGGTGCAAAATCTGACATATCTCGCCTTCAGGTCATGTTTGGGTCTAATGTTACAATGGCAGTGCAAGACCCATCATACCCGGCTTATGTAGACTTAAGTGTTATCTTGGGCCAGACTGGGCAGTTTCAGAAGGATGTTGAGAAGTATGGAAACATCGAATACATGAAGTGTAATCCAGAGAATGGTTTCTTTCCTGATTTATCTACTGTTTCGCGAACCGATATCATTTTTTTCTGTTCACCATACAATCCCACTGGTAATGCTGCAACAAGGGAGCAACTGACCCGACTTGTACAGTTTGCCAAGGACAATGGATCAATTCTAGTGTATGATTCGGGATATGCCATGTATATCTCGGATGACAGCCCAAGGTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCAATTGAGGTATCATCATTTTCCAAATATGCTGGGTTCACTGGAGTCCGTCTTGGTTGGACTGTGGTTCCAAAGGAGCTTCTATATTCAGATGGATTTCCTGTTGCCAAGGACTTTAACCGCATTGAATGTACAACCTTCAACGCTGCATCCAACATTTCTCAAGCTAGTGGTCTGGCTTGTCTTTCACCAGAAGGCCTAGAGGCTATGCATAAACTGGTAGGTTTCTACAAAGAAAATACTAATATAATCATGGAGACATTCACTTCTCTTGGTTTTAGCGTGTACGGAGGTAAGAATGCACCATATGTTTGGGTTCATTTCCCTGGTCAAAGCTCATGGGACGTGTTCAGCGAGATACTTGAGAAGACCCATGTGGTAACAACACCTGGCAGTGGTTTCGGACCAGCTGGTGATGGTTTCATTAGGGTTTGTGCTTTTAGTCACAGAGGCAATGTTCTAGAGGCCTGCAAAAGATTCAAGCGGTTATACAAGTGA 1380 0.4362 MYSLMSSPSISSSSSSFLGQTHFDSRNPNACLPTKDSWICKCVATPSTETTAHTTKVSRNANMAKLQAGYLFPEIARRRSAHMLKYPDAQVISLGIGDTTEPIPEVITSGMAKKAHALSTLEGYSGYGAEQGEKQLRAAIASTFYGDLSIEESDIFVSDGAKSDISRLQVMFGSNVTMAVQDPSYPAYVDLSVILGQTGQFQKDVEKYGNIEYMKCNPENGFFPDLSTVSRTDIIFFCSPYNPTGNAATREQLTRLVQFAKDNGSILVYDSGYAMYISDDSPRSIFEIPGAKEVAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFPVAKDFNRIECTTFNAASNISQASGLACLSPEGLEAMHKLVGFYKENTNIIMETFTSLGFSVYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPAGDGFIRVCAFSHRGNVLEACKRFKRLYK* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0924 459 Gene3D - 101 358 IPR015421 GO:0003824
Vvi3g0924 459 CDD AAT_like 92 456 - -
Vvi3g0924 459 SUPERFAMILY PLP-dependent transferases 70 454 IPR015424 -
Vvi3g0924 459 Gene3D Aspartate Aminotransferase, domain 1 71 455 IPR015422 GO:0003824
Vvi3g0924 459 Pfam Aminotransferase class I and II 90 453 IPR004839 GO:0009058|GO:0030170
Vvi3g0924 459 NCBIfam LL-diaminopimelate aminotransferase 58 456 IPR019942 GO:0008483
Vvi3g0924 459 PANTHER AMINOTRANSFERASE 10 459 IPR019942 GO:0008483
Vvi3g0924 459 FunFam LL-diaminopimelate aminotransferase, chloroplastic 101 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0924 Vvi-Chr3 9296882 9309342 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0924 K10206 - vvi:100244650 858.981