LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0922	ATGTACTCTCTCATGTCTTCATCGCCTTCTATCTCTTCATCTTCCTCTTCCTTTTTAGGCCAAACCCACTTCGATTCCAGAACCCCAAATGCTCGCCTTCCCACAAAAGATAGTTGGATATGTAAATGTGTGGCAACACCTCCCACAGAGACGACTGCTCACATGACAAAGGTTTCTCGCAATGCAAATATGGCCAAACTTCAAGCTGGTTATTTGTTTCCAGAGATAGCCAGAAGAAGGTCAGCACACATGCTAAAGTACCCTGATGCACAAGTGATAAGCCTTGGAATTGGTGACACTACTGAGCCCATTCCAGAAGTTATAACTTCTGGTATGGCAAAGAAAGCAAATGCATTGTCAACACTAGAGGGTTACAGTGGTTATGGAGCTGAACAAGGTGAAAATCGCTTGAGAGCTGCAATTGCTTCGACCTATTATGGTGACCTCAGCATAGAGGAAAGTGATATATTTGTCTCTGATGGTGCAAAATCTGACATATCTCGCCTTCAGGTCATGTTTGGGTCTAATGTTACAATGGCAGTGCAAGACCCATCATACCCGGCTTATGTAGACTCAAGTGTTATCTTGGGCCAGACTGGGCAGTTTCAGAAGGATGTTGAGAAGTATGGAAACATTGAATACATGAAGTGTAATCCAGAGAATGGTTTCTTTCCTGATTTATCTACTGTTTCACGAACCGATATCATTTTTTTCTGTTCACCAAACAATCCCACTGGTAATGCTGCAACAAGGGAGCAACTGACCCGACTTGTACAGTTTGCCAAGGACAATGGATCAATTCTAGTGTATGATTCGGCATATGCCATGTATATCTCGGATGACAGCCCAAGGTCCATCTTTGAAATTCCTGGAGCCAAGGAGGTTGCAATTGAGGTATCATCATTTTCCAAATATGCTGGGTTCACTGGAGTCCGTCTTGGTTGGACTGTGGTTCCAAAGGAGCTTCTATATTCAGATGGATTTCCTGTTGCCAAGGACTTTAACCGCATTGTATGTACAACCTTCAATGGTGCATCCAACATTTCTCAAGCTGGTGGTCTGGCTTGTCTTTCACCAGAAGGCCTAGAGGCTATGCATAAAGTGGTCGGTTTCTACCAAGAAAATACTAATATAATCATGGAAACATTCACTTCTCTTGGTTTTAGCGTGTACGGAGGTAAGAATGCACCATATGTTTGGGTTCATTTCCCTGGTCAAAGCTCATGGGACGTGTTCAGCGAGATACTTGAGAAGACCCATGTGGTAACAACACCTGGCAGTGGTTTCGGACCAGCTGGTGATGGTTTCATTAGGGTTAGTGCTTTTGGTCACAGAGGCAATGTTCTAGAGGCCTGCAAAAGATTCAAGCAGTTATACAAGTGA	1383	0.4367	MYSLMSSSPSISSSSSSFLGQTHFDSRTPNARLPTKDSWICKCVATPPTETTAHMTKVSRNANMAKLQAGYLFPEIARRRSAHMLKYPDAQVISLGIGDTTEPIPEVITSGMAKKANALSTLEGYSGYGAEQGENRLRAAIASTYYGDLSIEESDIFVSDGAKSDISRLQVMFGSNVTMAVQDPSYPAYVDSSVILGQTGQFQKDVEKYGNIEYMKCNPENGFFPDLSTVSRTDIIFFCSPNNPTGNAATREQLTRLVQFAKDNGSILVYDSAYAMYISDDSPRSIFEIPGAKEVAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFPVAKDFNRIVCTTFNGASNISQAGGLACLSPEGLEAMHKVVGFYQENTNIIMETFTSLGFSVYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPAGDGFIRVSAFGHRGNVLEACKRFKQLYK*	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0922	460	Hamap	LL-diaminopimelate aminotransferase [dapL].	59	458	IPR019942	GO:0008483
	Vvi3g0922	460	Gene3D	-	102	359	IPR015421	GO:0003824
	Vvi3g0922	460	MobiDBLite	consensus disorder prediction	1	21	-	-
	Vvi3g0922	460	PANTHER	AMINOTRANSFERASE	10	460	IPR019942	GO:0008483
	Vvi3g0922	460	SUPERFAMILY	PLP-dependent transferases	71	455	IPR015424	-
	Vvi3g0922	460	FunFam	LL-diaminopimelate aminotransferase, chloroplastic	102	359	-	-
	Vvi3g0922	460	NCBIfam	LL-diaminopimelate aminotransferase	59	457	IPR019942	GO:0008483
	Vvi3g0922	460	CDD	AAT_like	93	457	-	-
	Vvi3g0922	460	Pfam	Aminotransferase class I and II	91	454	IPR004839	GO:0009058\|GO:0030170
	Vvi3g0922	460	FunFam	LL-diaminopimelate aminotransferase, chloroplastic	343	456	-	-
	Vvi3g0922	460	Gene3D	Aspartate Aminotransferase, domain 1	72	456	IPR015422	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g0922	Vvi-Chr3	9270978	9285279	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0922	K10206		-	vvi:100244650	907.131