Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0909 ATGGGGCTGTGCAAGAGAGAATTAGCCCTCATCTGCTTCATTGGAATATTAGCCCTAGTCCATCCCTCCCATGCCCAAAACTCCCAACAAGACTACCTCGATGTCCACAACGCAGCTCGGGCGGACGTTGGCGTTGAGCCCATGACATGGGATGACAATGTGGCGGCCTATGCGAGGGACTATGCTAGCCAAAGGAGTGGCGACTGCAACATGGTGCATTCAAATGGTCCTTATGGCGAGAACCTCGCCATGGGCAGTGGTGATTTCACCGCCACGGATGCTGCCAACCTGTGGGTTGGAGAGAAGTCTAATTATGACTATAACTCTAACTCATGTGTTGGAGGAGAGTGTGGACATTATACTCAGGTGGTTTGGCGCAATTCGGTAAGTCTAGGGTGTGCAAGAGTGCAGTGCAACAATGGCTGGTGGTTCGTCAGCTGCAACTACAGCCCACAGGGCAACATCATCGGCCAGCACCCTTACTAG 486 0.5267 MGLCKRELALICFIGILALVHPSHAQNSQQDYLDVHNAARADVGVEPMTWDDNVAAYARDYASQRSGDCNMVHSNGPYGENLAMGSGDFTATDAANLWVGEKSNYDYNSNSCVGGECGHYTQVVWRNSVSLGCARVQCNNGWWFVSCNYSPQGNIIGQHPY* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0909 161 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 29 158 IPR001283 -
Vvi3g0909 161 SMART SCP_3 27 157 IPR014044 -
Vvi3g0909 161 Gene3D CAP 26 161 IPR035940 -
Vvi3g0909 161 FunFam Putative pathogenesis-related protein 1 26 161 - -
Vvi3g0909 161 PRINTS Venom allergen 5 signature 48 66 IPR002413 -
Vvi3g0909 161 PRINTS Venom allergen 5 signature 116 135 IPR002413 -
Vvi3g0909 161 CDD CAP_PR-1 29 161 - -
Vvi3g0909 161 ProSitePatterns CRISP family signature 2. 144 155 IPR018244 GO:0005576
Vvi3g0909 161 ProSitePatterns CRISP family signature 1. 118 128 IPR018244 GO:0005576
Vvi3g0909 161 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Vvi3g0909 161 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Vvi3g0909 161 PRINTS Allergen V5/Tpx-1 family signature 144 157 IPR001283 -
Vvi3g0909 161 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Vvi3g0909 161 Pfam Cysteine-rich secretory protein family 33 149 IPR014044 -
Vvi3g0909 161 SUPERFAMILY PR-1-like 19 161 IPR035940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0909 Vvi-Chr3 9101007 9101492 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0909 K13449 - vvi:100263556 352.058