Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0904 ATGGGGTTGTGTAGGAGTCCATTAGCACTCCTTTGTTTCATGGGGTTAGCCCTAGCTCACATCTGCTGTGCCCAGAACTCTCCACAAGACTACCTCAATGCTCACAACACCGCGCGCGCACAAGTTGGTGTTGGGCCTATGTCATGGGACAACACTGTGGCTGCCTACGCCCAGAATTATGCTAACCAGAGGATTGGCGATTGCAATCTAGTGCATTCAGGTGGGCCTTACGGTGAGAACCTTGCCTGGGGCAGCCCTTCATTGACAGGCACCGATGCGGTGAACTTGTGGGTGGGGGAGAAGTCTAATTATGACTACAACTCCAACTCATGTGTTGGTGGGCAATGTGGGCACTATACTCAAGTTGTTTGGAGCAAATCAGTGCGTCTTGGGTGCGCTAGGGTTCAATGCAACAATGGAGGGTGGTTCGTCACATGCAACTACGATCCACGGGGCAACTATATCGGACAACGTCCTTATTAA 483 0.5155 MGLCRSPLALLCFMGLALAHICCAQNSPQDYLNAHNTARAQVGVGPMSWDNTVAAYAQNYANQRIGDCNLVHSGGPYGENLAWGSPSLTGTDAVNLWVGEKSNYDYNSNSCVGGQCGHYTQVVWSKSVRLGCARVQCNNGGWFVTCNYDPRGNYIGQRPY* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0904 160 ProSitePatterns CRISP family signature 1. 117 127 IPR018244 GO:0005576
Vvi3g0904 160 Pfam Cysteine-rich secretory protein family 32 148 IPR014044 -
Vvi3g0904 160 SUPERFAMILY PR-1-like 10 160 IPR035940 -
Vvi3g0904 160 CDD CAP_PR-1 28 160 - -
Vvi3g0904 160 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 30 157 IPR001283 -
Vvi3g0904 160 FunFam Putative pathogenesis-related protein 1 25 160 - -
Vvi3g0904 160 Gene3D CAP 25 160 IPR035940 -
Vvi3g0904 160 ProSitePatterns CRISP family signature 2. 143 154 IPR018244 GO:0005576
Vvi3g0904 160 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Vvi3g0904 160 PRINTS Allergen V5/Tpx-1 family signature 143 156 IPR001283 -
Vvi3g0904 160 PRINTS Allergen V5/Tpx-1 family signature 116 132 IPR001283 -
Vvi3g0904 160 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Vvi3g0904 160 PRINTS Venom allergen 5 signature 47 65 IPR002413 -
Vvi3g0904 160 PRINTS Venom allergen 5 signature 115 134 IPR002413 -
Vvi3g0904 160 SMART SCP_3 26 156 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0904 Vvi-Chr3 9044693 9045175 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0904 K13449 - vvi:100258414 353.984