Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0903 ATGGGGTTGTGTAAGATCTCATCTTCACTAGTTGTTGGTTTCATGGGGTTAGTCCTTGCTCACATCTCCTATGCCCAAAACTCTCCACAAGACTTCCTCGATGCTCACAATGCCGCGCGTGCAGAAGTTGGTGTTGAATCTATGACATGGAATGACACTGTAGCTGCCTACGCCCAGAACTATGCTAACCAGAGGATTGGCGATTGCAATTTAGTGCATTCAAGTGGGCCTTACGGTGAGAACATTGCCTGGGGCACCCCTTCATTGACAGGCACCGATGCAGTGAACATGTGGGTGGGGGAGAAGCCTTATTATGACTACAACTCCAACTCATGCGTTGGTGGGGAATGCCTGCAGTATATTAAAGTTATTTGGCGCAACTCATTGCACCTTGGGTGCGCTAGGGTTCAGTGCAACACGGGTGGGTGGTTTGTCACTTGCAACTATGATCCTCCAGGCAACTACGTTGGACAGCGTCCTTTTCTGGAGAACTCTAACAGCAGTCATAGTTGTATAGTTGCTATTTACTGA 531 0.484 MGLCKISSSLVVGFMGLVLAHISYAQNSPQDFLDAHNAARAEVGVESMTWNDTVAAYAQNYANQRIGDCNLVHSSGPYGENIAWGTPSLTGTDAVNMWVGEKPYYDYNSNSCVGGECLQYIKVIWRNSLHLGCARVQCNTGGWFVTCNYDPPGNYVGQRPFLENSNSSHSCIVAIY* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0903 176 Pfam Cysteine-rich secretory protein family 33 149 IPR014044 -
Vvi3g0903 176 SMART SCP_3 27 157 IPR014044 -
Vvi3g0903 176 SUPERFAMILY PR-1-like 26 165 IPR035940 -
Vvi3g0903 176 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 30 166 IPR001283 -
Vvi3g0903 176 FunFam Putative pathogenesis-related protein 1 26 161 - -
Vvi3g0903 176 PRINTS Allergen V5/Tpx-1 family signature 144 157 IPR001283 -
Vvi3g0903 176 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Vvi3g0903 176 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Vvi3g0903 176 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Vvi3g0903 176 CDD CAP_PR-1 29 161 - -
Vvi3g0903 176 ProSitePatterns CRISP family signature 2. 144 155 IPR018244 GO:0005576
Vvi3g0903 176 Gene3D CAP 22 168 IPR035940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0903 Vvi-Chr3 8986361 8986891 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0903 K13449 - vvi:100232880 379.407