Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0902 ATGGGCAAGACATCACTGGCCCTTCTATGCCTCCTTGGCTTAGCCCTAGCGCATCTCTCCCATGCCCAAAACACCCCACAAGACTACCTTACCGCCCACAACGCCGCGCGGGCAGAGGTTGGAGTCCAGCCCATGACATGGGACAAAAAGTTAGCTAACTACGCATCGCAATATGTTAGTGAGAAGCTGATTGGTGACTGCAATCTTGAACACTCAGGAGGGCCTTATGGTGAGAACCTGGCTGCAAGGGGTGCTACTGACTTTGATGGCGCTGATGCAGTGAAGATGTGGGTGTCTGAGAAGCCTTATTATAACTACGACTCTAACTCATGCGTTGGAGGAGAGTGTGGACACTACACTCAGGTTGTGTGGAACACTTCAGTGAATGTGGGGTGTGCAAGAGTGTTGTGCAAGAATGGGGAATGGTGGATTGTTAGCTGCAACTACGACCCACCAGGCAACTATTTTGGAGAACGTCCTTATATTAAGAAAGGTTCTACATGA 504 0.5 MGKTSLALLCLLGLALAHLSHAQNTPQDYLTAHNAARAEVGVQPMTWDKKLANYASQYVSEKLIGDCNLEHSGGPYGENLAARGATDFDGADAVKMWVSEKPYYNYDSNSCVGGECGHYTQVVWNTSVNVGCARVLCKNGEWWIVSCNYDPPGNYFGERPYIKKGST* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0902 167 SUPERFAMILY PR-1-like 6 161 IPR035940 -
Vvi3g0902 167 ProSitePatterns CRISP family signature 1. 117 127 IPR018244 GO:0005576
Vvi3g0902 167 SMART SCP_3 24 157 IPR014044 -
Vvi3g0902 167 Gene3D CAP 23 161 IPR035940 -
Vvi3g0902 167 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 25 161 IPR001283 -
Vvi3g0902 167 Pfam Cysteine-rich secretory protein family 30 149 IPR014044 -
Vvi3g0902 167 PRINTS Venom allergen 5 signature 91 106 IPR002413 -
Vvi3g0902 167 PRINTS Venom allergen 5 signature 45 63 IPR002413 -
Vvi3g0902 167 PRINTS Venom allergen 5 signature 115 134 IPR002413 -
Vvi3g0902 167 FunFam Putative pathogenesis-related protein 1 23 161 - -
Vvi3g0902 167 ProSitePatterns CRISP family signature 2. 144 155 IPR018244 GO:0005576
Vvi3g0902 167 CDD CAP_PR-1 26 161 - -
Vvi3g0902 167 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Vvi3g0902 167 PRINTS Allergen V5/Tpx-1 family signature 116 132 IPR001283 -
Vvi3g0902 167 PRINTS Allergen V5/Tpx-1 family signature 45 63 IPR001283 -
Vvi3g0902 167 PRINTS Allergen V5/Tpx-1 family signature 144 157 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0902 Vvi-Chr3 8966562 8967065 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0902 K13449 - vvi:100251550 346.28