Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0900 ATGGGGTTGTGTAAGATCTCATCTTCACTAGTTGTTGGTTTCATGGGGTTAGTCCTTGCTCACATCTCCTATGCCCAAAACTCTCCACAAGACTTCCTCGATGCTCACAATGTCGCGCGTGCAGAAGTTGGTGTTGGGCCTATGTCATGGGACAACACTGTGGCTGCCTACGCCCAAAATTATACTAACCAGAGGATTGGCGATTGCAATCTAGTGCATTCAGGTGGGCCTTACGGTGAGAACCTTGCCTGGGGCTCCCCTTCATTGACAGGCATCGATGCAGTGAACTTGTGGGTGGGGGAGAAGACTAATTATGACTACAACTCCAACTCCTGCGTTGGTGGGGAATGCAGGCACTATACTCAAGTTATTTGGCGCAACTCATTGCGTCTTGGGTGCGCTAGGGCTCAGTGCAACAGTGGCGGGTGGTTTGTCACTTGCAACTATGATCCTCCAGGCAACTACGTTGGACAACGTCCTTTTACGGAGAACTCTAACAGCAGTCATAGTTGTATAGTTGCTATTTACTGA 531 0.4934 MGLCKISSSLVVGFMGLVLAHISYAQNSPQDFLDAHNVARAEVGVGPMSWDNTVAAYAQNYTNQRIGDCNLVHSGGPYGENLAWGSPSLTGIDAVNLWVGEKTNYDYNSNSCVGGECRHYTQVIWRNSLRLGCARAQCNSGGWFVTCNYDPPGNYVGQRPFTENSNSSHSCIVAIY* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0900 176 SMART SCP_3 27 157 IPR014044 -
Vvi3g0900 176 FunFam Putative pathogenesis-related protein 1 26 161 - -
Vvi3g0900 176 Pfam Cysteine-rich secretory protein family 33 149 IPR014044 -
Vvi3g0900 176 SUPERFAMILY PR-1-like 26 165 IPR035940 -
Vvi3g0900 176 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Vvi3g0900 176 PRINTS Allergen V5/Tpx-1 family signature 144 157 IPR001283 -
Vvi3g0900 176 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Vvi3g0900 176 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Vvi3g0900 176 CDD CAP_PR-1 29 161 - -
Vvi3g0900 176 ProSitePatterns CRISP family signature 1. 118 128 IPR018244 GO:0005576
Vvi3g0900 176 ProSitePatterns CRISP family signature 2. 144 155 IPR018244 GO:0005576
Vvi3g0900 176 Gene3D CAP 22 168 IPR035940 -
Vvi3g0900 176 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 30 166 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0900 Vvi-Chr3 8949703 8950233 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0900 K13449 - vvi:100253281 380.178