Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0898 ATGGGCAAGACATCACTGGCCCTTCTATGCCTCCTTGGCTTAGCCCTAGCGCATCTCTCCCATGCCCAAAACACCCCACAAGACTACCTTACCGCCCACAACGCCGCGCGGGCAGAGGTTGGAGTCCAGCCCATGACATGGGACAAAAAGTTAGCTAACTACGCATCGCAATATGTTAGTGAGAAGCTGATTGGTGACTGCAATCTTGAACACTCAGGAGGGCCTTATGGTGAGAACCTGGCTGCAGGGGGTGCTACTGACTTTGATGGCGCTGATGCAGTGAAGATGTGGGTGTCTGAGAAGCCTTATTATAACTACGACTCTAACTCATGCGTTGGAGGAGAGTGTGGACACTACACTCAGGTTGTGTAG 372 0.5215 MGKTSLALLCLLGLALAHLSHAQNTPQDYLTAHNAARAEVGVQPMTWDKKLANYASQYVSEKLIGDCNLEHSGGPYGENLAAGGATDFDGADAVKMWVSEKPYYNYDSNSCVGGECGHYTQVV* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0898 123 Pfam Cysteine-rich secretory protein family 30 123 IPR014044 -
Vvi3g0898 123 SMART SCP_3 24 123 IPR014044 -
Vvi3g0898 123 FunFam CAP, cysteine-rich secretory protein, antigen 5 23 123 - -
Vvi3g0898 123 SUPERFAMILY PR-1-like 6 123 IPR035940 -
Vvi3g0898 123 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 25 123 IPR001283 -
Vvi3g0898 123 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Vvi3g0898 123 PRINTS Allergen V5/Tpx-1 family signature 45 63 IPR001283 -
Vvi3g0898 123 PRINTS Allergen V5/Tpx-1 family signature 116 123 IPR001283 -
Vvi3g0898 123 Gene3D CAP 23 123 IPR035940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0898 Vvi-Chr3 8923838 8924209 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0898 K13449 - vvi:100258405 242.276