Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0897 ATGGGGTTGTGTAAGATTTCATTGCCACTCCTTGTTGGTCTCATGGGGTTAGCTCTAGCTCACACCTGCTATGCCCAGAACTCTCCACAGGACTACGTCAATGCTCACAATACAGCGCGGGCACAAGTTGGTGTTGGGTCTATGACATGGGACGACACTGTGGCTACCTACGCCCAGAACTATGCTAACCAGAGGATTGGCGACTGCAATCTAGTGCATTCAGGTGGGCCTTACGGTGAGAACCTTGCCTGGGGCAGCCCTTCATTGACAGGCACCGATGCAGTGAACATGTGGGTGGCCGAGAAGCCTTATTATGACTACAACTCCAACTCATGCGTGGGTGGGGAATGCCGACACTATACTCAGGTTGTTTGGAGCAACTCAGTGCGTCTTGGGTGCGCTAGGGTTCAATGCAACAGTGGAGGGTGGTTCGTCACATGCAACTACGATCCACCGGGCAACTATCAGGGACAACATCCTTATTAA 486 0.5226 MGLCKISLPLLVGLMGLALAHTCYAQNSPQDYVNAHNTARAQVGVGSMTWDDTVATYAQNYANQRIGDCNLVHSGGPYGENLAWGSPSLTGTDAVNMWVAEKPYYDYNSNSCVGGECRHYTQVVWSNSVRLGCARVQCNSGGWFVTCNYDPPGNYQGQHPY* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0897 161 Pfam Cysteine-rich secretory protein family 33 149 IPR014044 -
Vvi3g0897 161 SUPERFAMILY PR-1-like 17 161 IPR035940 -
Vvi3g0897 161 FunFam Putative pathogenesis-related protein 1 26 161 - -
Vvi3g0897 161 SMART SCP_3 27 157 IPR014044 -
Vvi3g0897 161 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 31 158 IPR001283 -
Vvi3g0897 161 Gene3D CAP 26 161 IPR035940 -
Vvi3g0897 161 CDD CAP_PR-1 29 161 - -
Vvi3g0897 161 ProSitePatterns CRISP family signature 2. 144 155 IPR018244 GO:0005576
Vvi3g0897 161 ProSitePatterns CRISP family signature 1. 118 128 IPR018244 GO:0005576
Vvi3g0897 161 PRINTS Allergen V5/Tpx-1 family signature 144 157 IPR001283 -
Vvi3g0897 161 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Vvi3g0897 161 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Vvi3g0897 161 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Vvi3g0897 161 PRINTS Venom allergen 5 signature 116 135 IPR002413 -
Vvi3g0897 161 PRINTS Venom allergen 5 signature 48 66 IPR002413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0897 Vvi-Chr3 8916375 8916860 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0897 K13449 - vvi:100247990 348.206