Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0895 ATGGATTATGGTCAGAGTTCGTCATCTCTGCCCATGTATGCACGAGGTGACACCAAGGCAATGGGGTTGTGTAAGATTTCAATGGCGCTCCTTGTTGGTCTCATGGGGTTAGCCCTAGCTCACACCTGCTGTGCCCAGAACTCTCCACAGGACTACGTCGATGCTCACAATGCAGCGCGGGCCCAAGTTGGCGTTGGGTCTATAACATGGAACGACACTGTAGCTGCCTACGCCCAGAACTATGCTAACCAGAGGATTAGCGACTGCAATCTAGTGCACTCAGGTGGGCCTTACGGTGAGAACCTGGCCAAAGGCAGCGGTTCATTGACAGGCACCGATGCGGTGAACTTGTGGGTGGGGGAGAAGCCTTATTATGACTACAACTCCAACTCATGCGTTGGTGGAGAGTGTGGGCACTATACTCAGGTTGTGTGGCGCAACTCGGTGCGTCTTGGGTGCGCTAGGGTTCAGTGCAACAATGGGTGGTGGTTCGTCACATGCAACTACGATCCACCGGGCAACTATGTGGGACAGCGGCCTTATTAA 546 0.5385 MDYGQSSSSLPMYARGDTKAMGLCKISMALLVGLMGLALAHTCCAQNSPQDYVDAHNAARAQVGVGSITWNDTVAAYAQNYANQRISDCNLVHSGGPYGENLAKGSGSLTGTDAVNLWVGEKPYYDYNSNSCVGGECGHYTQVVWRNSVRLGCARVQCNNGWWFVTCNYDPPGNYVGQRPY* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0895 181 SUPERFAMILY PR-1-like 47 181 IPR035940 -
Vvi3g0895 181 ProSitePatterns CRISP family signature 2. 164 175 IPR018244 GO:0005576
Vvi3g0895 181 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 51 178 IPR001283 -
Vvi3g0895 181 PRINTS Allergen V5/Tpx-1 family signature 114 127 IPR001283 -
Vvi3g0895 181 PRINTS Allergen V5/Tpx-1 family signature 68 86 IPR001283 -
Vvi3g0895 181 PRINTS Allergen V5/Tpx-1 family signature 137 153 IPR001283 -
Vvi3g0895 181 PRINTS Allergen V5/Tpx-1 family signature 164 177 IPR001283 -
Vvi3g0895 181 SMART SCP_3 47 177 IPR014044 -
Vvi3g0895 181 FunFam Putative pathogenesis-related protein 1 46 181 - -
Vvi3g0895 181 ProSitePatterns CRISP family signature 1. 138 148 IPR018244 GO:0005576
Vvi3g0895 181 PRINTS Venom allergen 5 signature 68 86 IPR002413 -
Vvi3g0895 181 PRINTS Venom allergen 5 signature 136 155 IPR002413 -
Vvi3g0895 181 Pfam Cysteine-rich secretory protein family 53 169 IPR014044 -
Vvi3g0895 181 CDD CAP_PR-1 49 181 - -
Vvi3g0895 181 Gene3D CAP 46 181 IPR035940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0895 Vvi-Chr3 8895286 8909155 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0895 K13449 - vvi:100265141 345.895