Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0894 ATGGACTCATCAGTACTGGAAACCCTGGTCATTGCCTGCGTCTTCCTCATGCTACCAAGCGTTTTCCTAGCTCAGAACTCGCCGGCCGACTTTTTGAACGCGCACAACGACGTGAGGGGCACGGTGGGGCTGCCATGTCTGGTTTTGAACATCACTCTGCAGGAGTATGCCCAGTCATATGCGAATAACCGGAGTTCGGACTGCCTACTTAGGCTGTCCGGCGCTCCAGATTACGGGGAAAACTTGTTTATTGGTACACCGGCCAACTACAGCGCCCTGGATGCTGTAAACGCATGGGCTGCCGAGAGGCAGTACTACAACTACGACACCAACACATGTATGATGGGGAAGGTTTGTGGGCATTACACTCAGCTGATCTGGAACACAACGACTAGTGTGGGGTGTGCGAGGGTGCCATGCGTGAATGGCTCGGTTTTCATCACCTGCAACTATTATCGTGCTGGTAATGTGATAGGGCAGCGCCCATATTAG 492 0.5305 MDSSVLETLVIACVFLMLPSVFLAQNSPADFLNAHNDVRGTVGLPCLVLNITLQEYAQSYANNRSSDCLLRLSGAPDYGENLFIGTPANYSALDAVNAWAAERQYYNYDTNTCMMGKVCGHYTQLIWNTTTSVGCARVPCVNGSVFITCNYYRAGNVIGQRPY* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0894 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 30 160 IPR001283 -
Vvi3g0894 163 SMART SCP_3 26 159 IPR014044 -
Vvi3g0894 163 Gene3D CAP 26 163 IPR035940 -
Vvi3g0894 163 SUPERFAMILY PR-1-like 21 163 IPR035940 -
Vvi3g0894 163 FunFam CAP, cysteine-rich secretory protein, antigen 5 25 163 - -
Vvi3g0894 163 ProSitePatterns CRISP family signature 2. 146 157 IPR018244 GO:0005576
Vvi3g0894 163 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Vvi3g0894 163 PRINTS Allergen V5/Tpx-1 family signature 119 135 IPR001283 -
Vvi3g0894 163 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Vvi3g0894 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Vvi3g0894 163 ProSitePatterns CRISP family signature 1. 120 130 IPR018244 GO:0005576
Vvi3g0894 163 CDD CAP_PR-1 28 163 - -
Vvi3g0894 163 Pfam Cysteine-rich secretory protein family 32 151 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0894 Vvi-Chr3 8883958 8884449 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0894 K13449 - vvi:100265128 342.428