Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0891 ATGAACGATTATCACAAACTTGTCTTCTTTATTGGGGTTTTAACCTTGATCAGTTTGGTTCAAGTTTCAGATGCTTCTGTTGTTTCAACAGGAGACTTCAACAAGGATTTCTTTGTCATTTGGTCTCCTAGCCATGTCAATACTTCTGCAGATGGCCATGCAAGAAGCTTGAAGCTTGATAAGGAATCAGGTGCTGGTTTTGCTTCAAACCAGTTATTCCTGTTTGGGCAGATTGACATGCAAATCAAACTAGTAACAGGCCATTCTGCAGGCACAGTTGTGGCCTATTATCTAACTTCTGATCAACCTAATCGCGACGAGGTCGACTTTGAGTTCCTGGGAAATGTGAGTGGGCAGCCATATATCCTTCAAACCAATGTTTTTGCAGACGGGTTTGACAACAGGGAAGAGAGGATTTATCTATGGTTTGATCCAACAGAGGACTTCCACACCTATTCCATACTGTGGAACCTTCACCAGATTGTATTCATGGTGGACTGGGTGCCCATAAGAGTGTACAGAAACCATGCAGACAAGGGGGTGGCCTTTCCCAGATGGCAGCCAATGAGCATCAAAATCAGCCTATGGAACGGCGACAGCTGGGCGACCCGAGGTGGAAAGGACAAGATTGACTGGACAAAGGGCCCATTCATAGCCTCATTCAGGAACTACAAGCTTGATGCCTGCATTTGGAGGGGCAATGCAAGGTTTTGCAGGGCAGATAGCCCTACAAATTGGTGGAACAAAGAAAGGTTCAGCTCTCTAACATCAACCCAGAGAAGGCTTTTCAAATGGGTTAGGACACATCATCTCATTTATGACTATTGCCAAGATAACGAGAGATTCCAAAACAACCTTCCAAAGGAATGCTTTCTTCCCAAGTACTGA 888 0.4471 MNDYHKLVFFIGVLTLISLVQVSDASVVSTGDFNKDFFVIWSPSHVNTSADGHARSLKLDKESGAGFASNQLFLFGQIDMQIKLVTGHSAGTVVAYYLTSDQPNRDEVDFEFLGNVSGQPYILQTNVFADGFDNREERIYLWFDPTEDFHTYSILWNLHQIVFMVDWVPIRVYRNHADKGVAFPRWQPMSIKISLWNGDSWATRGGKDKIDWTKGPFIASFRNYKLDACIWRGNARFCRADSPTNWWNKERFSSLTSTQRRLFKWVRTHHLIYDYCQDNERFQNNLPKECFLPKY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0891 295 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vvi3g0891 295 FunFam Xyloglucan endotransglucosylase/hydrolase 20 292 - -
Vvi3g0891 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 290 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vvi3g0891 295 ProSitePatterns Glycosyl hydrolases family 16 active sites. 107 117 IPR008263 GO:0004553|GO:0005975
Vvi3g0891 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 31 290 IPR044791 GO:0004553
Vvi3g0891 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 293 IPR013320 -
Vvi3g0891 295 Pfam Glycosyl hydrolases family 16 34 214 IPR000757 GO:0004553|GO:0005975
Vvi3g0891 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 221 IPR000757 GO:0004553|GO:0005975
Vvi3g0891 295 Gene3D - 19 293 - -
Vvi3g0891 295 PIRSF EndGlu_transf 2 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0891 Vvi-Chr3 8842961 8844144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0891 70 295 Glycoside Hydrolase AT2G14620 75.221 2.04e-134 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0891 K08235 - vvi:100261688 628.632