Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0885 ATGGGTATTCGTGGTGTTACTGTTTCTGATGTCCGAGGCTTTGGTGCTCAAGGCGGTTCGCCTGAAAGACAGGCAGGCTCTGAATTTTCTGAGGACAAATTTGTTGCTAAAGTTAAAATGGAGATTGTGGTGAGCAAAGACCAGGTTGAAGCAGTAATTGACAAGATCAATGAGGTGGCAAGGACTGGAGAGATTGGTGATGGCAAGATCTTTTGTAAGATTTCAGGCTTTCTTCTTTAG 240 0.4375 MGIRGVTVSDVRGFGAQGGSPERQAGSEFSEDKFVAKVKMEIVVSKDQVEAVIDKINEVARTGEIGDGKIFCKISGFLL* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0885 79 Gene3D - 1 74 IPR015867 -
Vvi3g0885 79 SUPERFAMILY GlnB-like 1 72 IPR011322 -
Vvi3g0885 79 PANTHER NITROGEN REGULATORY PROTEIN P-II 1 72 IPR002187 GO:0006808|GO:0030234
Vvi3g0885 79 SMART P_II_3 1 76 IPR002187 GO:0006808|GO:0030234
Vvi3g0885 79 Pfam Nitrogen regulatory protein P-II 1 72 IPR002187 GO:0006808|GO:0030234
Vvi3g0885 79 PRINTS P-II protein signature 1 19 IPR002187 GO:0006808|GO:0030234
Vvi3g0885 79 PRINTS P-II protein signature 31 54 IPR002187 GO:0006808|GO:0030234
Vvi3g0885 79 PRINTS P-II protein signature 62 79 IPR002187 GO:0006808|GO:0030234
Vvi3g0885 79 MobiDBLite consensus disorder prediction 1 28 - -
Vvi3g0885 79 ProSiteProfiles P-II protein family profile. 1 79 IPR002187 GO:0006808|GO:0030234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0885 Vvi-Chr3 8766129 8766881 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0885 - - vvi:100260017 155.992