Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0880 ATGTCCTTGTTTCTCAGAGCCTTTCCTCTCATAGCTCTTCGCTCCAAACCCTTCCCTCTCTGCCGCACCATTTTCAAACTCAATCCAAAACTACTCCCGAACAGAACCATTTCCTATGCTTCTGCTTCTTTTTCAACAGAAACCCAAATTTCCGATCCCAAACCCTCCATAATCCTCAAGGACACTCTTCAATGGGTCAGCCGAACCGGATTTTGCGGCGAATTATCTGTTGACGATGTGGGCAAACGGGTCCGCATCTGTGGGTGGGTTGCGCTTCACCGTGTCCATGGAGGTCTCACTTTCCTCAATCTACGCGACCATACCGGTATCGTTCAGGTTACAACCCTTCCCGATGAGTTCCCCAAAGCACATTCTACCGTGAATGAGTTGAGACTTGAGTATGTGATTGCTGTAGAAGGCATTGTTCGATCTCGGCCAAGTGAGTCAATCAATAAGAAAATGAGAACTGGCTTAATTGAGGTTGCTGTGGAGCATGTCCAAGTGTTGAATGCTGTGACATCTAAGTTGCCCTTCTTGGTTACCACTGCAGATGATGCGAAAGATACTGTTAAGGAGGAGATCCGTTTGAGATACCGATGCCTTGACCTACGCCGGCAGCAAATGAATTCCAACATTATGCTAAGACATAGAGTGGTGAAACTCATTCGAAGATACCTAGAAGATATACATGGTTTTGTGGAGATTGAGACTCCAATACTCTCTAGATCTACTCCAGAGGGTGCTCGGGATTATTTGGTGCCCTCAAGAGTTCAGCCAGGGACATTCTATGCTTTGCCCCAAAGTCCACAACTGTTTAAGCAAATGCTAATGGTCTCCGGCTTTGATAAATATTATCAAATAGCAAGATGTTTTCGAGATGAAGATCTTAGAGCAGATAGACAGCCTGAGTTCACACAGTTGGATATGGAATTGGCTTTCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAGGTTTTTCTAGAGATTAAGGGCATCCAACTACCCAACCCTTTCCCAAGGCTCACATATGCTGAAGCAATGAGTCGATATGGTTCTGATAGGCCAGATCTTCGTTTCGATCTTGAGTTGAGAGAGGTGTCTGATGTTTTCTCAGAGACTACCTTCAAGGTGTTTGCAGATACTTTGGCAAGTGGGGGAATTATCAAAGTCTTATGTGTGCCTTCGGGCGCAAAACATTATTCAAACACGGCTCTTAAAAAGGGTGATATTTACAGTGAAGCAATCAAATCTGGAGCAAAGGGTTTGCCCTTCCTGAAGGTCTTGGATGATGGGGAAGTAGAAGGAATTCCTGCACTGGTATCAAGTTTGGATCCAACAAATAAAAAGCGGTTACTAAAACAATGCTCTGCAGGATCAGGTGATCTCATATTATTTGCAGTGGGTGACCATGCTTCAGTTAATAAAACTCTAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCATTCCAGGCATTCAATTCTGTGGGTGACCGATTTTCCAATGTTTGAGTGGAACAGTGCAGAGCAGAGGCTTGAGGCCTTGCATCACCCTTTCACTGCCCCAAATCCTGAAGATATGGAAGATCTTTCCTCAGCCCGTGCCTTAGCTTATGACATGGTTTACAATGGTGTTGAGATTGGTGGAGGAAGTTTGAGAATTTTTAAGCGCGAAGTCCAAGAAAAGGTTTTGGAAATTGTTGGAATCTCACCTGAACAGGCTGAGGCAAAGTTTGGCTACCTTCTAGAGGCTCTGGACATGGGTGCTCCTCCACATGGGGGGATAGCTTATGGACTGGATAGGTTGGTGATGCTATTGGCAGGTGCTAATTCCATCAGGGATGTTATAGCCTTCCCAAAAACCACAACTGCTCAGTGTGCCCTGACTAGGACACCCTCAGAGGTGGATCCTCAGCAACTAAAAGATCTTTCATATCAGACCCAATAG 1974 0.4504 MSLFLRAFPLIALRSKPFPLCRTIFKLNPKLLPNRTISYASASFSTETQISDPKPSIILKDTLQWVSRTGFCGELSVDDVGKRVRICGWVALHRVHGGLTFLNLRDHTGIVQVTTLPDEFPKAHSTVNELRLEYVIAVEGIVRSRPSESINKKMRTGLIEVAVEHVQVLNAVTSKLPFLVTTADDAKDTVKEEIRLRYRCLDLRRQQMNSNIMLRHRVVKLIRRYLEDIHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLRLNEDLIRQVFLEIKGIQLPNPFPRLTYAEAMSRYGSDRPDLRFDLELREVSDVFSETTFKVFADTLASGGIIKVLCVPSGAKHYSNTALKKGDIYSEAIKSGAKGLPFLKVLDDGEVEGIPALVSSLDPTNKKRLLKQCSAGSGDLILFAVGDHASVNKTLDRLRVFIAHELGLVDHSRHSILWVTDFPMFEWNSAEQRLEALHHPFTAPNPEDMEDLSSARALAYDMVYNGVEIGGGSLRIFKREVQEKVLEIVGISPEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRTPSEVDPQQLKDLSYQTQ* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0880 657 Pfam tRNA synthetases class II (D, K and N) 192 631 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g0880 657 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 70 634 - -
Vvi3g0880 657 Pfam GAD domain 383 482 IPR029351 -
Vvi3g0880 657 CDD AspRS_core 212 631 IPR047090 -
Vvi3g0880 657 Gene3D - 60 172 IPR012340 -
Vvi3g0880 657 PRINTS Aspartyl-tRNA synthetase signature 265 277 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g0880 657 PRINTS Aspartyl-tRNA synthetase signature 282 295 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g0880 657 PRINTS Aspartyl-tRNA synthetase signature 547 563 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g0880 657 PRINTS Aspartyl-tRNA synthetase signature 591 605 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g0880 657 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 67 657 IPR004524 GO:0005524|GO:0016874
Vvi3g0880 657 NCBIfam aspartate--tRNA ligase 67 655 IPR004524 GO:0005524|GO:0016874
Vvi3g0880 657 CDD EcAspRS_like_N 68 208 IPR047089 -
Vvi3g0880 657 SUPERFAMILY Class II aaRS and biotin synthetases 192 630 IPR045864 -
Vvi3g0880 657 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 214 628 IPR006195 -
Vvi3g0880 657 Gene3D - 347 496 IPR004115 GO:0004812|GO:0005524|GO:0005737
Vvi3g0880 657 SUPERFAMILY GAD domain-like 364 496 IPR004115 GO:0004812|GO:0005524|GO:0005737
Vvi3g0880 657 SUPERFAMILY Nucleic acid-binding proteins 68 170 IPR012340 -
Vvi3g0880 657 Gene3D Bira Bifunctional Protein; Domain 2 186 652 IPR045864 -
Vvi3g0880 657 Pfam OB-fold nucleic acid binding domain 84 168 IPR004365 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0880 K01876 - vvi:100241273 1301.96