Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0875 ATGGATTTACACTGTGCTTATCATCAGGGGCCTGGACATGAGACCGATCAATGTACCGCTCTGAGGCACGCTATTCAGGATCTGATAAACCAGGGTTTGGTACACTTGGGTCAGCCGAGTGTGACCACAAACCTGTTACCTACCCACACCACTCATGCAGTCCCTCCACCAGCTGATGGTATCCATTTCTTGGACTTCGATGAGATTGATGATCATGTCCATATGTTGAGTTGGGATGATTCAGACCCAGAGCCACAGATGCTCACTCCATTCCGATTAGTTCCTGAGGCAGCATCTGTACATGCGGCCACTTCCGAGCCTTTGACATTCACATGCTATAGCGTTCAGACGCCGTTCGTCTTAGTCCCAGATGTTGAGGAGGTTCAGGCTCCACATAGTGATGATCCTCAAACTCCGGACGTTCAGTATATCCTCCGGGGAGGGAGAGTATTGAGACAACCACCTCCAGCCGCTGCCGCTAGACCCTTAGGGGGTACATCATCCCAGAAAGAGGTCAGAGTAGAGGATGACGAGATTTTGAGGCAGTTGCAGAGCACTCAGGCTCGTATTTCTATCTGGAGCCTTTTAGCGTTCTCCAATACTCATCGGGATGCACTAACTCGAGCTCTGAGCCAGATCAGAGTTGATACCACGACCACTCCCGAGGGACTCATTCATAGGATGACGGCTAGCAAAGCCACTTGTATCGTCTTTTTCAATGATGACTTGCCACCGGAGGGCTCGAACCACACTCGTCCGCTCTACATATCTATTGGCTGTTCAGGCCGCCGAGTCCCATCTGTCCTTTTGGACAATGGCTCGGCCTTGAACGTATGTCCTCTTGCCACTGCCATCGCCCTTGGATACGCTCCTTCTGATTTCAGTCCCTCCACTCAGACCGTTCGCGCATATGACAGTACTCGGAGGGAGGTCATGGGTACATTGGAGATTGAGTTACTGATCGGTCCGGCCACTTTTGTCACTGTCTTTCAGGTTTTGAGGATTCCTACATCCTTTAACCTGCTTTTGGGCCGACCGTGGATTCACCGAGCTGGAGCCATTCCTTCTTCACTTCATCTGAAAGTGAAGTTCATCCATGATGGTCAGGTCGTCGTGGTACAGTCTGTGGGGGACATGTTCATTGCTGCCGAGCTTGTGCTCGAGATTAGTCACACTGATGACGATATTTTTATAGACTGGATTCACCTTCGATGA 1215 0.5062 MDLHCAYHQGPGHETDQCTALRHAIQDLINQGLVHLGQPSVTTNLLPTHTTHAVPPPADGIHFLDFDEIDDHVHMLSWDDSDPEPQMLTPFRLVPEAASVHAATSEPLTFTCYSVQTPFVLVPDVEEVQAPHSDDPQTPDVQYILRGGRVLRQPPPAAAARPLGGTSSQKEVRVEDDEILRQLQSTQARISIWSLLAFSNTHRDALTRALSQIRVDTTTTPEGLIHRMTASKATCIVFFNDDLPPEGSNHTRPLYISIGCSGRRVPSVLLDNGSALNVCPLATAIALGYAPSDFSPSTQTVRAYDSTRREVMGTLEIELLIGPATFVTVFQVLRIPTSFNLLLGRPWIHRAGAIPSSLHLKVKFIHDGQVVVVQSVGDMFIAAELVLEISHTDDDIFIDWIHLR* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0875 404 CDD retropepsin_like 256 349 - -
Vvi3g0875 404 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 4 54 - -
Vvi3g0875 404 SUPERFAMILY Acid proteases 254 353 IPR021109 -
Vvi3g0875 404 Gene3D Acid Proteases 242 370 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0875 Vvi-Chr3 8443429 8444643 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0875 - - vvi:104882404 671.003