Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0874 ATGGCGGTCGCATCCAATTCAAGGGTGTTTATGCAAGGGGTCATTGGGAAGAGCCCAGGTACTGGTTTGGGAAATCTGGTTTCAGGTGTTTGTTTTCGTACTAGTGGTGTTCGTTCTGGCATAAAGCTTGGAGTTCGGGCAACGATGCAAGTGGGTTTGGAGGAGGTGAAGAGTTCTCAGTTGCCTAATAGCGTTGATGGGAATTTGGGGTTTGATGTGGTTTCGGAGGGGGAGTTGAGGGAGAAGGGGTTTTTAGGGATGAGGAAGACCAAGCTGGTGTGCACAATCGGGCCTGCGTGTTGCTTGTTGGAGGATTTGGAGAACTTGGCGTCGAGCGGGATGAATGTTGCGAGGCTTAATATGTGCCATAACACCTGGGAGTGGCATCGGGATGTGATTAGGAAGATCAAGAGGTTGAACGAGGAAAAGGGGTATTGTGTTTCAGTGATGATTGATACTGAGGGCGGTCAGATCCATGTGGTTGATCATGGGGCTCCTTTCTCTGTCAAAGCCGAGAATGAGTCGATCTGGTTGTTCACCACTCAAAAATTTGAGGGTTCTCGTCCATTCACTGTTCAAGCAAACTATGAAGGATTTTCCGAAGGTATTACAGTGGGTGATGAAGTTGTTATTGACGGTGGAATGGCAAGCTTTGAAGTAATCGAAAAGATCGGGAATGATTTGCGTTGTAAGTGCACAGATCCTGGTCTTCTCCTACCTCGTGCCAAGTTGAGCTTTTGGAGAGATGGAAAGCTGGTGGAGAAAAATTATGAGCTTCCCACCATATCAACCAAGGACTGGGCTGATATCGAGTTTGGAATTTCTGAAGGTGTTGATTTCATTGCAATGTCATTTGTGAAGGATGCCAATGCCATCAAGCAACTCAAGAGCTACCTCTCCAACAAATCATCCAAATCTATAGGAGTTCTGGCAAAAATTGAGAGCTTGGAGTCACTTCAGCACTTGGAAGAGATCATAGAAGCTTCTGATGGTATCATGGTGGCACGTGGTGATCTTGGAGTTGAGATCCCACTTGAACAGATTCCAGTAGTCCAAGCGAAGATAACCCATGTTTGCAGACAACTAAACAGGCCTGTTATAGTTGCTTCTCAACTCCTTGAGTCAATGGTTGAATATCCAACACCAACCCGTGCAGAGGTTGCAGATGTTTCTGAAGCTGTTCGACAGTATGCTGATGCCTTAATGCTGTCTGGTGAGTCAGCTATTGGTTCATACGGACAGAAGGCACTCTGTGTCTTGCGGATGGCCAGCAGCAGAATGGAACTATGGAGTCGTGAGGAGAACCGCCAAAGTGCACTGCATCAGCGACAGCTTGGAGTATCTTTGCCTGACCGGATAGCTGAGCAGATTTGCAACTGTGCTGTGGAAATGGCCGACAACCTTGGTGTGGATGCCATCTTTGTATACACAAAGCATGGTCAAATGGCATCACTCTTGTCACGCAACCGTCCAAACTCTCCCATATTTGCCTTCACTGACAACCACAGCACCCGAATGAGTATGAATCTGCAATGGGGAGTCACCCCTCTTCTTGTTGAATTATCAGAGGACATGGAAGCTAACATCACAAAAACCATTGATCTCATAAAAATGAAGGGGGTATTGGAAGAGGGCGACACGGTTTTGGTGGTCTCAGATATCACTCCATCTTGTGCAACCCCAAAGGCTTTCCAGTCAATCCAAGTGAAGACCATTGTCTAG 1722 0.4686 MAVASNSRVFMQGVIGKSPGTGLGNLVSGVCFRTSGVRSGIKLGVRATMQVGLEEVKSSQLPNSVDGNLGFDVVSEGELREKGFLGMRKTKLVCTIGPACCLLEDLENLASSGMNVARLNMCHNTWEWHRDVIRKIKRLNEEKGYCVSVMIDTEGGQIHVVDHGAPFSVKAENESIWLFTTQKFEGSRPFTVQANYEGFSEGITVGDEVVIDGGMASFEVIEKIGNDLRCKCTDPGLLLPRAKLSFWRDGKLVEKNYELPTISTKDWADIEFGISEGVDFIAMSFVKDANAIKQLKSYLSNKSSKSIGVLAKIESLESLQHLEEIIEASDGIMVARGDLGVEIPLEQIPVVQAKITHVCRQLNRPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGSYGQKALCVLRMASSRMELWSREENRQSALHQRQLGVSLPDRIAEQICNCAVEMADNLGVDAIFVYTKHGQMASLLSRNRPNSPIFAFTDNHSTRMSMNLQWGVTPLLVELSEDMEANITKTIDLIKMKGVLEEGDTVLVVSDITPSCATPKAFQSIQVKTIV* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0874 573 Pfam Pyruvate kinase, alpha/beta domain 455 554 IPR015795 -
Vvi3g0874 573 FunFam Pyruvate kinase 261 427 - -
Vvi3g0874 573 NCBIfam pyruvate kinase 88 569 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 PANTHER PYRUVATE KINASE 78 553 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 SUPERFAMILY PK beta-barrel domain-like 169 247 IPR011037 -
Vvi3g0874 573 Gene3D - 88 427 IPR040442 -
Vvi3g0874 573 SUPERFAMILY PK C-terminal domain-like 449 555 IPR036918 -
Vvi3g0874 573 Pfam Pyruvate kinase, barrel domain 87 423 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 FunFam Pyruvate kinase 156 260 - -
Vvi3g0874 573 Gene3D - 156 260 IPR015806 GO:0004743|GO:0006096
Vvi3g0874 573 PRINTS Pyruvate kinase family signature 145 161 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 PRINTS Pyruvate kinase family signature 361 385 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 PRINTS Pyruvate kinase family signature 405 421 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 PRINTS Pyruvate kinase family signature 386 404 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 PRINTS Pyruvate kinase family signature 278 292 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 PRINTS Pyruvate kinase family signature 309 335 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 PRINTS Pyruvate kinase family signature 336 360 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g0874 573 Gene3D - 428 554 IPR036918 -
Vvi3g0874 573 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 82 428 IPR015813 GO:0003824
Vvi3g0874 573 ProSitePatterns Pyruvate kinase active site signature. 307 319 IPR018209 GO:0004743|GO:0006096
Vvi3g0874 573 FunFam Pyruvate kinase 423 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0874 Vvi-Chr3 8432236 8436227 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0874 K00873 - vvi:100244565 1122.07