Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0872 ATGGATATGAATGTTGACCATTACAATGTTTTGGGATTACCATCGGGTGAGGAAGGAGCCAAATTATCAGAGAAAGAGATTTCAAAAGCCTACAGAGTGAAGGCTTTGGAGTTGCACCCAGATAAGAGGCCAGATGATCCCCAAGCCCATGCAAACTTCCAGAAGCTAAAAACCTCCTATGAGATTCTCAAGGATGAAAAAGCAAGGAAGTTGTTTGACGACCTTCTACGAGTGAAACGTGAGCAGTTCCACCGACAAGCACAGTATGATGTTAAAAGGAGGAGGATGGTTTCTGATCTAGAGGAAAGAGAGCGGGCGGCTAATGCTCCTGACCCAGCTTCTAAAGCCCGAGAAGAAGAGGAAAGAATTACTAAGAAGCTAAAAGAAGAAATTGCTAGAATACGTGCAATGCATGCAAATAAGGGAGCATCAGGCTCAAGGAAAGAGGCACCAGGAACAAGAAAGGAGAGTGTAGCTGATGGTGGAGGTGGTTTGAACAAGGAGAAAGTGCTAAAGGTCTCTTGGGAGAAGGGTGGGGAGGATTACACTGCAGAGGGATTGAGGGAGGTGTTTGCGAAGTTTGGTGAGGTTGAAGATGTTGTTCTCAAGAGTTCCAGGAAGAAAGGTTCAGCACTTGTTGTGATGGCCTCTAAAGAAGCAGCTGTGGCTGCTACTGGAAATGTGTGTGGTCATATTTCAAATCCATTACTTGTGCTTCCACTTGAACCAGCTGTGGTTATGGAGTTTCCCCCAAGGTCCATGGAGCCTGAGCCCTCAAGTAATCTGGTTGGAGCTGGATATCAATCATTTGAAGAATCTGTTTTAAAGAAACTTCAAAAGGCTGCAGAAAAGCAGAAGTGA 861 0.4506 MDMNVDHYNVLGLPSGEEGAKLSEKEISKAYRVKALELHPDKRPDDPQAHANFQKLKTSYEILKDEKARKLFDDLLRVKREQFHRQAQYDVKRRRMVSDLEERERAANAPDPASKAREEEERITKKLKEEIARIRAMHANKGASGSRKEAPGTRKESVADGGGGLNKEKVLKVSWEKGGEDYTAEGLREVFAKFGEVEDVVLKSSRKKGSALVVMASKEAAVAATGNVCGHISNPLLVLPLEPAVVMEFPPRSMEPEPSSNLVGAGYQSFEESVLKKLQKAAEKQK* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0872 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 227 IPR000504 GO:0003723
Vvi3g0872 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 243 IPR000504 GO:0003723
Vvi3g0872 286 CDD DnaJ 6 65 IPR001623 -
Vvi3g0872 286 ProSiteProfiles dnaJ domain profile. 6 76 IPR001623 -
Vvi3g0872 286 PANTHER DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED 1 286 - -
Vvi3g0872 286 MobiDBLite consensus disorder prediction 137 163 - -
Vvi3g0872 286 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vvi3g0872 286 PRINTS DnaJ domain signature 48 68 IPR001623 -
Vvi3g0872 286 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vvi3g0872 286 Gene3D - 163 245 IPR012677 -
Vvi3g0872 286 Gene3D DnaJ domain 1 100 IPR036869 -
Vvi3g0872 286 SMART dnaj_3 5 68 IPR001623 -
Vvi3g0872 286 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Vvi3g0872 286 SUPERFAMILY Chaperone J-domain 3 78 IPR036869 -
Vvi3g0872 286 Coils Coil 113 137 - -
Vvi3g0872 286 SUPERFAMILY RNA-binding domain, RBD 181 227 IPR035979 GO:0003676
Vvi3g0872 286 MobiDBLite consensus disorder prediction 97 121 - -
Vvi3g0872 286 CDD RRM_DNAJC17 169 241 IPR034254 -
Vvi3g0872 286 Pfam DnaJ domain 6 73 IPR001623 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0872 4 77 Miscellaneous Gene Families AT1G16680 39.189 2.59e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0872 K09537 - vvi:100261697 535.798