Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0862 ATGGGGAAGGAGAAGCACTACTGGCTGCTCAAGACAGAGCCTGGAGAGTGGTCATGGGAGGACCAAGCTGCCAACGAAGGCTTATCAAACTGGGACGGAGTCAAGAACAAGCAAGCCCAGAAGAATCTCAAGGCTATGCATCTTGGCGACCTCTGCTTCTTCTATCACTCCGGCGCCAAGGCCCGCCGCGTCGTCGGTGTCGTCTCCGTCGTTCGTGAATGGTACGAAGAGGGCGACGGCGGTGCTGGTGGTGCTGTGGATGTGAGGTGTGTGGGGGAGATGAGGAGGGCGGTGGACTTAGGGGAGATGAAGAAGGAGAGTGGGCTGAAGGGGTTTGGGCTGTTCCGGCAGCCGCGGCTGTCGGTGGTTCCGGTGCCGGAGGAGGTGTGGAAGAGGGTCTGCGAGATGGGAGGTGGGTATGAAGGGGACGGGGGGGAATCTGGAGATGCGGAGGTGGGTGATGATGGCGGTGGAAGTGAAGGGGGACGGAGCAAAATTGAAATGCAAGCCCTAGGAGGAGGATATCGATTTGCAGAGCTGCTGCCACGGTCATGGCGAAGATCCACTGCCCTCCGATCATTTTCTTCTTCATCCTCATTCTTCTCCGACCAGTCTCGTGGTGGTCTCCCTCGATTCTTCTCCGAAGTTCTCCCTCCTTCCAAGGGTGGTATTGTACGTGTACAGGGTGATGAATTCTGGCACATGACTAAAGTTTTAAGATTGAGTGTGAATGATAGGGTAGAGCTCTTCAATGGGAAAGGAGGATTGGTGGAAGGAAGCATTAATAGAATTGATCGCACTGGACTTGATTTTATCGCTTTGGAAGATCCAAAATTAGTGCTTCCACAAAGCTCACGGTGGCATGTGTTTGCAGCTTTTGGGACTTTAAAGGGTGGTCGAGCTGACTGGCTGGTTGAAAAGTGCACAGAGTTGGGGACCAGTAGTGTAACCCCTTTGCTGACGGAACGTTCTCCTTCAATTTCAGAAAATCGGGTGGATCGATTGCAACGTGTCATTCTAGCTGCTGCTAAGCAATGTCAACGTCTGCATGAAATGACTCTGAATCCTCCTACAACAATCGATAGCCTCTTACCTATTGTCACCCAATCAAAGCTATCCTTGGTGGCTGTTGCAGAAGCTACTCCTGTTTTTAGTGTGTTGACTTCATCAAGAAGAGAATCTACTGGGCTAATGATAATTGGTCCGGAAGGGGACTTCACTGAGAAAGAGCTGAATATGATGAGGGAAGCAGGTGCTACAGCTGTTGGTCTTGGGCCTCACCGACTACGGGTTGAAACTGCAACAATAGCACTTTTAGCAACTTTAATGCTATGGTCCGACTCTGAGAGGCCATCTGAACCCTAG 1365 0.5158 MGKEKHYWLLKTEPGEWSWEDQAANEGLSNWDGVKNKQAQKNLKAMHLGDLCFFYHSGAKARRVVGVVSVVREWYEEGDGGAGGAVDVRCVGEMRRAVDLGEMKKESGLKGFGLFRQPRLSVVPVPEEVWKRVCEMGGGYEGDGGESGDAEVGDDGGGSEGGRSKIEMQALGGGYRFAELLPRSWRRSTALRSFSSSSSFFSDQSRGGLPRFFSEVLPPSKGGIVRVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQCQRLHEMTLNPPTTIDSLLPIVTQSKLSLVAVAEATPVFSVLTSSRRESTGLMIIGPEGDFTEKELNMMREAGATAVGLGPHRLRVETATIALLATLMLWSDSERPSEP* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0862 454 FunFam Os03g0676100 protein 4 146 - -
Vvi3g0862 454 CDD RsmE-like 292 440 IPR046886 -
Vvi3g0862 454 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 208 453 IPR006700 GO:0006364|GO:0008168
Vvi3g0862 454 SUPERFAMILY PUA domain-like 5 138 IPR015947 -
Vvi3g0862 454 Gene3D - 208 451 IPR029026 -
Vvi3g0862 454 SUPERFAMILY alpha/beta knot 285 446 IPR029028 -
Vvi3g0862 454 Pfam RNA methyltransferase domain 286 442 IPR046886 -
Vvi3g0862 454 Gene3D ph1033 like domains 4 146 - -
Vvi3g0862 454 Pfam EVE domain 7 136 IPR002740 -
Vvi3g0862 454 FunFam uncharacterized protein LOC106771328 isoform X2 208 453 - -
Vvi3g0862 454 Pfam RNA methyltransferase PUA domain 228 271 IPR046887 -
Vvi3g0862 454 SUPERFAMILY PUA domain-like 213 271 IPR015947 -
Vvi3g0862 454 MobiDBLite consensus disorder prediction 140 164 - -
Vvi3g0862 454 NCBIfam RsmE family RNA methyltransferase 225 443 IPR006700 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0862 K09761 - vvi:100258322 534.643