Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0853 ATGGAAGAACAAACAGCCCAAAACCCTAGACACCCACCTCTCTGCCAGGAGTGCAAATTGAATCCGTCAAAGTACACATGCCCGGGTTGCTCTGTGCGCTCCTGTAGTCTTCCTTGTGTCAAAGCTCACAAGCAACAGACTGGGTGTACGGGCAAGAGGCAGCAGACCCAGTTCGTTCCCCTCTCTCAATTTGATGATACTCTCCTCTTATCTGATTACAATTTGCTCGAGGAAGTGAAGAGTGTTGCAGAATCTGCTCAAAGAAGGAGAGTTAAACTGTGCGGGTATTCTCAGCTTAAGTTTCCATACCATCTTCGAGGCCTTAGGAATGCTGCAGGAAGTCGCAGGACGAAACTCCTATTTCTCCCCAGTGGAATGTCAAAGAGGGAAAAAAATAAATCTCAATACAACCAAAGATCTAAATGCATTACTTGGACAATTGAATGGCGGTTTCATTCAACAGATGTTGTTTTGCTCGATCACGGGATAAATGAAAACTCAACCTTCTCATCTGTAATTGAGAAGCATCTAAAGCCTGGTCCATGGAATCATAAGCTCAAGCCGTTCTGTGCAGAGCAGCTGGACTGTCTCAAGTTTTTCATTCGTAAATATCCAAAGGGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGTGCTCCAATAAGACAGCAATTTGCCAATTTAGTTATTCTAGAGTACCCCCAGATTCATGTTTTCCTCCCTTCACATAGCTATGATTTTGATGCCACTAAAGATGCCAATCCCTGCCATCGTCGAGCAGAGCTTAAGGAGTCTCTTACCATTGATCATCCAAGTCCAAAAGGCATTTCATTCAGGGAAGAGGAAATAGAAGAACATGGCGGTTCTTTAGATTCTCAGGTTCTAGATCTCATGCAGCATGTGAAATCGACACAAGCTAATAAGCCACAGTCCAGTCCCCAGAAGAAGGAACCAAGCGAAAACATAGATTTTGATTTTGAGCAAGGCTTGCTTGATGTATATTCTGATATCATTGCTCAAATTAATCCTGATGATTTTCTTGATTGGGAAGGTGACTTTTCCAAGGAAGTGAAATCTGAAGAAGGAATGGATTGTTCAGATTTTGGTGGAGTTTTCCCAGTGGAGGAATTAGAGGAAGGGGAGATTCCTGGGTGCTGA 1158 0.4352 MEEQTAQNPRHPPLCQECKLNPSKYTCPGCSVRSCSLPCVKAHKQQTGCTGKRQQTQFVPLSQFDDTLLLSDYNLLEEVKSVAESAQRRRVKLCGYSQLKFPYHLRGLRNAAGSRRTKLLFLPSGMSKREKNKSQYNQRSKCITWTIEWRFHSTDVVLLDHGINENSTFSSVIEKHLKPGPWNHKLKPFCAEQLDCLKFFIRKYPKGPRSPFHELDISAPIRQQFANLVILEYPQIHVFLPSHSYDFDATKDANPCHRRAELKESLTIDHPSPKGISFREEEIEEHGGSLDSQVLDLMQHVKSTQANKPQSSPQKKEPSENIDFDFEQGLLDVYSDIIAQINPDDFLDWEGDFSKEVKSEEGMDCSDFGGVFPVEELEEGEIPGC* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0853 385 PANTHER UNCHARACTERIZED 11 301 - -
Vvi3g0853 385 SUPERFAMILY HIT/MYND zinc finger-like 11 50 - -
Vvi3g0853 385 MobiDBLite consensus disorder prediction 302 321 - -
Vvi3g0853 385 Gene3D - 2 56 - -
Vvi3g0853 385 ProSiteProfiles Zinc finger HIT-type profile. 15 49 IPR007529 -
Vvi3g0853 385 FunFam box C/D snoRNA protein 1 4 55 - -
Vvi3g0853 385 MobiDBLite consensus disorder prediction 302 317 - -
Vvi3g0853 385 Pfam HIT zinc finger 13 41 IPR007529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0853 Vvi-Chr3 8229351 8232273 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0853 - - vvi:100266130 805.053