Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0852 ATGTTTAGAATTGCAGCTAATAATTCTGTAGTAGTGGCTGATTTTTGGGGAAGACAAGAAGGTGGAGGCGGGGGATGGGAGGTGCACTTTAGAAGACCCTTTCAAGATTGGGAGTTGGAGGAGGTGAGCCGCTTTTTGGGTTACATTTCTACAGTAAAGGTGCAAGAAGGGGAGGATTTTCTGGTTTGGAAAATTGAGAGGAAAGGAACTTTTAAGGTAAAATCTTATTATAGGTCTTTGAAGGAAGACAATAGCCCTTTAAGAACTCGTTTTTTTGCTTGGGAAGCAGTTTGGGGATCCAAAGTGGAGCTTAAGGCTGATGGTCAGTTCACACTTGAGGATCCACTGGGCCAATTCATATGGCAAGCTCAGTCTGGGGCCCATGGGGTTGCTTATGCTGCTATGCTTGAATCTGGGAACTCTGTTCTTGCAAGTGAAGATTCTAGTTATGTATGGGAGAGCTTCAAGAGTCCTGCAGACACCATCTTGCCAACCCAAGTCCTGGAGATTGGTGGCATGCTGTCTTCTCGGCAAGCTGAAGGCAACTACTCAAAGGGGAGGTTTCAGATCCGTTTGGTGCCTGATGGAAATCTTGTGCTTAATACCTTCAACCTGGAAACCAATACTGAATATGATGCTTATTATTGA 648 0.4475 MFRIAANNSVVVADFWGRQEGGGGGWEVHFRRPFQDWELEEVSRFLGYISTVKVQEGEDFLVWKIERKGTFKVKSYYRSLKEDNSPLRTRFFAWEAVWGSKVELKADGQFTLEDPLGQFIWQAQSGAHGVAYAAMLESGNSVLASEDSSYVWESFKSPADTILPTQVLEIGGMLSSRQAEGNYSKGRFQIRLVPDGNLVLNTFNLETNTEYDAYY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0852 215 Gene3D - 97 154 IPR036426 -
Vvi3g0852 215 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 93 212 - -
Vvi3g0852 215 Pfam D-mannose binding lectin 101 169 IPR001480 -
Vvi3g0852 215 SUPERFAMILY alpha-D-mannose-specific plant lectins 99 173 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0852 Vvi-Chr3 8220525 8221777 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0852 - - vvi:109123208 180.259