Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0821 ATGGATGAAAAGTACTTAACTGTCCAAGATGCTGATGGGAAGGTAAGGCACTTCAATGTGATGAAGACTCCATGTGGGTTTGCTCGGTTTCTTTCACTGGATGTTCTCAAGGATCCTCGTAATGGATACTTGATGGATGATTCTTGCATTTTCGGAGCAGAGGTTTTTGTTATTAAATATAGTGGCAAAGGGGAGTGTCCTTCCATGCTAAAGGATCCTGTTGGTGGTACTTTCACTTGGGTGATTAAGAATTTCTCCACACTGAATGAGGAAGTCCTTCACTCTGAAATATTCAACGTTAAAGAATATAAAGGGAAGTTGAGTCTCTACCCAGAAGGTAATGGTAAGGCAAAGAACAAAAGCCTGTCCCTCTTTCTAGGGCTGGCTGAAACACTTCATCATCCAACAAAATTTTATGCTGAATTTGAGTTGTTGACAAAGAATCAATGCCGCGGTAGGCATGCTAAATCAAATGGTAAGCTACATATTTTACATTATTTGGTTCTGTGA 510 0.4 MDEKYLTVQDADGKVRHFNVMKTPCGFARFLSLDVLKDPRNGYLMDDSCIFGAEVFVIKYSGKGECPSMLKDPVGGTFTWVIKNFSTLNEEVLHSEIFNVKEYKGKLSLYPEGNGKAKNKSLSLFLGLAETLHHPTKFYAEFELLTKNQCRGRHAKSNGKLHILHYLVL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0821 169 ProSiteProfiles MATH/TRAF domain profile. 75 169 IPR002083 GO:0005515
Vvi3g0821 169 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 70 166 IPR008974 GO:0005515
Vvi3g0821 169 CDD MATH 76 162 IPR002083 GO:0005515
Vvi3g0821 169 SUPERFAMILY TRAF domain-like 73 157 - -
Vvi3g0821 169 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 2 65 IPR008974 GO:0005515
Vvi3g0821 169 ProSiteProfiles MATH/TRAF domain profile. 1 55 IPR002083 GO:0005515
Vvi3g0821 169 PANTHER TRAF-LIKE FAMILY PROTEIN 3 157 - -
Vvi3g0821 169 SUPERFAMILY TRAF domain-like 15 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0821 Vvi-Chr3 7739421 7740245 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0821 - - vvi:100265153 329.717