Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0820 ATGCCACAATCTGTCCTGCAAATAGTAATTAAGGAAATTATAACGATTTCCAGAACATTAAGATACATCCAACCGTCCGACTACTTGTTCCGGGTAGAGTGTGTCTCTTCCCTGATGAACACAAACATTGAAAAGTATGAATCAGGGAAATTTGAAGCAGGTGGCTACAAATGGAGATTGTGTCTCTACCCAAACGGGAATATAAAAAGTAATGGGAAAGGTTACATCTCCCTTTACTTAGCAATAGCAGATACTAAAATGCTTCCTCTTGGTTGGGAGGTTAATGTTAACTTCAAATTGTTTGTGTTTAATCATAAACATGACCAGTACTTAACTGTCCAAGATGCTGGTGGGAAGCTAACCCGCTTCAATGTGATGAAGACTCAATGTGGTTTTCCTCAGTTTCTGTCGCTAGATGTTCTCAATGATCCTTGTAATGGATACCTGATGGAGGACTCTTGCATATTTGGAGCAGAGGTTTTTGTTATAAAATATAGTGGCAAAGGGGAGTGTCTTTCCATGATAAAGGAACCTGTTGATGGTACTTTCACTTGGGTGATTGAGAATTTCTCTACACTGAAGGAGAAAGTCATGTACTCTGATGTATTCACAGTTGAAGATTTCAAATGGAAGCTAATTCTCTACCCCAAAGGAAGTTCTAAGACAAAGAACAAAAGCCTATCCCTCTTTCTAGAGCTGGCTGACTGTGAAACACTTGATAATCAGAGTAAGTTGTATGCTGAATTCGAGCTGTTGATAAGTGATCAAGGCAACCTTGGATATGTCAAACACCACGGTACATATTATTCTTTTTCCTTCTTATATTCTCCTGCTTTAACTCATGACAAGGTTACTGTTGTCTGGTTTAAGTTGAAATCATATTGTCCTTCTACTTTGCCAGTTCCAAAATATTCTGTTGAAGTGAAGCACCAAACCAAAAACTTCAATCACTTTGCTATTGGTTAG 966 0.383 MPQSVLQIVIKEIITISRTLRYIQPSDYLFRVECVSSLMNTNIEKYESGKFEAGGYKWRLCLYPNGNIKSNGKGYISLYLAIADTKMLPLGWEVNVNFKLFVFNHKHDQYLTVQDAGGKLTRFNVMKTQCGFPQFLSLDVLNDPCNGYLMEDSCIFGAEVFVIKYSGKGECLSMIKEPVDGTFTWVIENFSTLKEKVMYSDVFTVEDFKWKLILYPKGSSKTKNKSLSLFLELADCETLDNQSKLYAEFELLISDQGNLGYVKHHGTYYSFSFLYSPALTHDKVTVVWFKLKSYCPSTLPVPKYSVEVKHQTKNFNHFAIG* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0820 321 SUPERFAMILY TRAF domain-like 178 285 - -
Vvi3g0820 321 Pfam MATH domain 32 162 IPR002083 GO:0005515
Vvi3g0820 321 Pfam MATH domain 187 255 IPR002083 GO:0005515
Vvi3g0820 321 PANTHER TRAF-LIKE FAMILY PROTEIN 19 261 - -
Vvi3g0820 321 CDD MATH 28 160 IPR002083 GO:0005515
Vvi3g0820 321 ProSiteProfiles MATH/TRAF domain profile. 25 160 IPR002083 GO:0005515
Vvi3g0820 321 SUPERFAMILY TRAF domain-like 26 168 - -
Vvi3g0820 321 SMART math_3 182 284 IPR002083 GO:0005515
Vvi3g0820 321 SMART math_3 30 141 IPR002083 GO:0005515
Vvi3g0820 321 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 284 IPR008974 GO:0005515
Vvi3g0820 321 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 15 168 IPR008974 GO:0005515
Vvi3g0820 321 CDD MATH 181 272 IPR002083 GO:0005515
Vvi3g0820 321 ProSiteProfiles MATH/TRAF domain profile. 180 321 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0820 Vvi-Chr3 7716202 7726782 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0820 - - vvi:100242863 518.85