Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0808 ATGGGGTTGTGGGAATCGTTGCTCAATTGGCTGCGAAGCCTCTTTTTCAAACAAGAAATGGAGCTATCTTTGATAGGCCTTCAGAATGCAGGAAAAACATCACTTGTAAATGTTATTGCAACTGGTGGATATACTGAAGACATGATACCCACAGTGGGATTTAACATGAGGAAGGTAACTAAGGGGAATGTCACAATAAAGTTGTGGGATCTGGGAGGACAACCTAGGTTTCGCAGTATGTGGGAGAGATATTGCCGTGCAGTTTCAGCTATTGTTTATGTTGTGGATGCTGCTGATCCCGATAACTTGACTGTCTCAAGAGGTGAACTTCATGACCTGTTAAGTAAGGCTTCCCTGAATGGCATCCCTTTGCTGGTACTAGGTAATAAGATTGACAAGCCAGGAGCTTTGTCTAAACCAGAGCTGACAGAGCAAATGGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATGCAAGAACTCAACCAACATCGATACGGTTATTGACTGGCTTGTAAAGCATTCCAAATCAAAGAATTGA 555 0.4198 MGLWESLLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYTEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLTVSRGELHDLLSKASLNGIPLLVLGNKIDKPGALSKPELTEQMELRSITNREVCCYMISCKNSTNIDTVIDWLVKHSKSKN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0808 184 NCBIfam small GTP-binding protein domain 18 176 IPR005225 GO:0005525
Vvi3g0808 184 ProSiteProfiles small GTPase Arf family profile. 13 180 - -
Vvi3g0808 184 SMART arf_sub_2 1 184 - -
Vvi3g0808 184 Gene3D - 1 181 IPR027417 -
Vvi3g0808 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 182 IPR027417 -
Vvi3g0808 184 CDD Arl10_like 21 179 IPR044154 GO:0003924|GO:0005525|GO:0015031
Vvi3g0808 184 ProSiteProfiles small GTPase Rab1 family profile. 15 184 - -
Vvi3g0808 184 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 183 - -
Vvi3g0808 184 SMART sar_sub_1 8 180 IPR006689 GO:0003924|GO:0005525
Vvi3g0808 184 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Vvi3g0808 184 PRINTS GTP-binding SAR1 protein signature 21 44 IPR006689 GO:0003924|GO:0005525
Vvi3g0808 184 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Vvi3g0808 184 SMART rab_sub_5 20 183 - -
Vvi3g0808 184 FunFam ADP-ribosylation factor-like protein 8a 1 181 - -
Vvi3g0808 184 Pfam ADP-ribosylation factor family 9 178 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0808 Vvi-Chr3 7469920 7483956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0808 24 147 Miscellaneous Gene Families AT5G05670 31.852 1.55e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0808 K07955 - vvi:100244584 374.015