Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0806 ATGATTACACAGCCAGTTTGGAGGCAATGTTTGGAGAAGCCTCACAAAGCTCAGTATGGAGGAGGAATAGTTTTAAACCCAGAGTTGGATGATGGGTTGGAAGGATGGTCGGCTTTTGGAGAAGCAAAGATAGAAGAAAGGGTATCGGGGGGCAACAACTTCATTGTGGCTCACAGCAGAAACCAGCCATATGATAGTTCTTCGCAGAAGCTTCACTTGCAGAAGGACAAGCTCTACACCTTCTCTGCTTGGATTCAAGTGAGCAGCGGAAGTGCTCCGGTGGCAGCTGTTTTGAAAACAAATGCCGGGTTGAAATACGCTGGGGCAGTTGTTGCTGAGTCGGGGTGTTGGTCCATGCTTAAGGGTGGACTCACTGTGGATGCTTCTGGCCCTGCTCAGCTCTATTTTGAGAGCAAAAATACATCAGTAGAGATATGGGTGGATAGCATCTCATTACAACCATTCACTCAAGAGCAGTGGAAGTCTCATCAACATCAAAGCGTAGAGAAGACGCGAAAGAGAAATGTGAGACTCCAAGCAATTGATGTCAAAGGAAACCCCATAACAGGAGCAACAATGGCACTTAAGCAAAATAAAGCTAATTTTCCAATCGGTGCTGTCATCAACGAATTCGTCATCAACAACACTGTCTACCAGAATTGGTTCACCAAAAGATTCACAGTCGCAACTTTCGGAAACCAACTCAAGTGGTACAGCAACGAAAGGTCCCCTGGAAAGGAGAACTACTCCTTCCCTGACGCCATGCTCCAGTTCTGCAAGAAAAATGGCATTAATGTCCGCGGCCACAATATTTTGTGGGACGATCCCGTTATGCAGCCTAAGTGGGTTCCCTCCCTTTCACCTACCCAACTCCGATCAGCCGCTGACAGAAGGATAAACTCGGTTGTGAATCGATACAGAGGCCAATTTATTGCATGGGACGTCGTGAATGAGAATTTGCATTTTACGTTCTTTGAGGACAGGCTTGGGGCCAATTATTCGGCAGCTGTTTTCCAGAAAACTCACCAACTTGATCCGGAGCCCGTCTTGTTCTTGAATGATTATAATACCCTAGAGCGGATTGATGATGCCTCAGTGAAACCCCGAAGGTACCTTGAAAAGCTGAAAGAGATCCGATCTTTTTCGGGTGGAAAGCTATCATTGGGAATTGGGCTCGAGGGTCATTTCGAAGCTGCTCCCAACCTTCCTTATGTGAGAGCTGCAATTGATACTCTTGCTGAGGCTAAAGTACCCGTTTGGATTACGGAGCTGGACGTGAGCACCATGCCCGATCAGGCAAGGCACTTTGGGGAGATTCTAGAGGAGGCTCACGCTCACCCGGCCGTGAATGGAATAGTAACATTTGGAACATGGAGTCCAAGGGGCTGTTACAGGATGTGTTTGACAGACGGGAATTTCAAGAACTTGCCACCAGGGGATGTTTTGGACAAGCTGTTGAAGCAGTGGAGTCATGAGGGCTTGGTAGGCGTCACCAATGCTGATGGTTTCTTTGATTCTTCCCTTTTCCATGGAGATTATCAAGTCAGAGTCACTCATCCAACTTTGATGACGAAGTCCTCACTGATTCATAGCTTTAAGGTGCCATCCACAGACACTTCTCAGGAAGCAGCAGTGCTTCTTGTTAAAGTTTCCGCTTGA 1659 0.472 MITQPVWRQCLEKPHKAQYGGGIVLNPELDDGLEGWSAFGEAKIEERVSGGNNFIVAHSRNQPYDSSSQKLHLQKDKLYTFSAWIQVSSGSAPVAAVLKTNAGLKYAGAVVAESGCWSMLKGGLTVDASGPAQLYFESKNTSVEIWVDSISLQPFTQEQWKSHQHQSVEKTRKRNVRLQAIDVKGNPITGATMALKQNKANFPIGAVINEFVINNTVYQNWFTKRFTVATFGNQLKWYSNERSPGKENYSFPDAMLQFCKKNGINVRGHNILWDDPVMQPKWVPSLSPTQLRSAADRRINSVVNRYRGQFIAWDVVNENLHFTFFEDRLGANYSAAVFQKTHQLDPEPVLFLNDYNTLERIDDASVKPRRYLEKLKEIRSFSGGKLSLGIGLEGHFEAAPNLPYVRAAIDTLAEAKVPVWITELDVSTMPDQARHFGEILEEAHAHPAVNGIVTFGTWSPRGCYRMCLTDGNFKNLPPGDVLDKLLKQWSHEGLVGVTNADGFFDSSLFHGDYQVRVTHPTLMTKSSLIHSFKVPSTDTSQEAAVLLVKVSA* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0806 552 SMART glyco_10 235 485 IPR001000 GO:0004553|GO:0005975
Vvi3g0806 552 SUPERFAMILY (Trans)glycosidases 186 491 IPR017853 -
Vvi3g0806 552 Pfam Glycosyl hydrolase family 10 198 449 IPR001000 GO:0004553|GO:0005975
Vvi3g0806 552 SUPERFAMILY Galactose-binding domain-like 20 153 IPR008979 -
Vvi3g0806 552 Gene3D Glycosidases 189 496 - -
Vvi3g0806 552 Pfam Carbohydrate binding domain 23 139 IPR003305 GO:0016798
Vvi3g0806 552 Gene3D - 11 156 - -
Vvi3g0806 552 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 189 485 IPR001000 GO:0004553|GO:0005975
Vvi3g0806 552 PANTHER GLYCOSYL HYDROLASE 10 540 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0806 Vvi-Chr3 7441440 7444729 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0806 9 542 Glycoside Hydrolase AT4G33860 56.691 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0806 - - vvi:100266982 1112.44