Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g0805 | ATGGACATCAAGCCATCAAGATTGATTGGAGACAAAAATGAAAGGGAAAGAAGACATGTGAACAACATGGTTTGTTCCTATTGGCTCCGTGGGAGGTGCAACAGAAACCCTTGTAGGTTCCTGCACCAAGAATTGCCCCAAAACACCCACTATCAAATTTCAAATCAGTTCGGCAAAAACTGCTGGCAGAGGAACCCCGACTCTGATTCGAAGAGTGCATCAAGTTTAACGAGTCTGGATAGGTCATCAGGTTCAACAACTCCGAAGTGTTCATCAGCTTCAAATCAATCCCATAGAAACAACAGGGAGAGGTCTCTCTATTCTGACCAGAAGGGTGAATGGGACTCAACTAATCTAAGGTGTTCATCAAGTTCAACAAGAGCAGGAAGTAGCTCTGGAAATGGAATTACACAGAAAGTAATTGGAGAAAGGGTCTGCAAGTACTGGCTACATGGAAATTGTGTGGAGGCAGATAAGTGCCAGTATCTCCATTCATGGTTTAAGGGCCATGGGGTTTTCAAGTTGGCAGAGCTTAATGGGCACATCATGGCCATCTCTGGAATTGTGCTTCCTTCTGGCTCAAAGAAGCTCTATACTGCCAGTAGGGATGGGTATATACGGGTTTGGGACTGCCATACTGGTCAATGTGATGGTGTGGTCAATCTTGGAGGGGAAATTGGGTCCTTAATCAGTGCAGGCCCTTGGGTATTTGCTGGAATAAAAGATGTTGTTAAGGCATGGAATATTGAGTCTTGTGCTAATCTCTCTCTTGACGGACCAGTTGGGCAAATTTATGCTATGGTGGTGAATAATGATATTCTATTTGCGGGGGCACAGAATGGCACTATACATGCATGGAAAGCCAATAAGGAAACCAATGCTTTTGAGCCAGCTACAACATTGGAAGGCCACAATGGTGCTGTGGTTTCCCTCACAGTAGGTGGTGGGAGACTTTATTCTGGTTCCATGGACAATACAATAAGAGTGTGGGATCTTGATACATTACAATGTATTCATACACTGAAGGAGCATGCATCAGTTGTGATGTCTCTTGTTTGTTGGGGTCCCTATTTAATATCATGTTCATTGGACCAAACAATTAAGGTTTGGTTTGCTATTGAAGCTGGCAACCTGGAAGTGACTTACACACACAATGAAGAACATGGTGTGCTATCTCTTTTTGGTATGAACAATTTGGAAGGGAAACCAATATTGTTGTGCTCTTGCAATGACAATTCTGTGCGGCTTTATGAATTACCATCATTCACTGAGAAGGGCAGGATATTTGCAAAAGAAGAAGTCCGAGAGATTCAGATAGGGCCAGGGGGACTTGTTTTCACTGGGGATGGAACTGGACAAGTTGATGTTTGGAAATGGCAGGCAGAGCCAACTTCATTGACATCTGAATGA | 1410 | 0.4362 | MDIKPSRLIGDKNERERRHVNNMVCSYWLRGRCNRNPCRFLHQELPQNTHYQISNQFGKNCWQRNPDSDSKSASSLTSLDRSSGSTTPKCSSASNQSHRNNRERSLYSDQKGEWDSTNLRCSSSSTRAGSSSGNGITQKVIGERVCKYWLHGNCVEADKCQYLHSWFKGHGVFKLAELNGHIMAISGIVLPSGSKKLYTASRDGYIRVWDCHTGQCDGVVNLGGEIGSLISAGPWVFAGIKDVVKAWNIESCANLSLDGPVGQIYAMVVNNDILFAGAQNGTIHAWKANKETNAFEPATTLEGHNGAVVSLTVGGGRLYSGSMDNTIRVWDLDTLQCIHTLKEHASVVMSLVCWGPYLISCSLDQTIKVWFAIEAGNLEVTYTHNEEHGVLSLFGMNNLEGKPILLCSCNDNSVRLYELPSFTEKGRIFAKEEVREIQIGPGGLVFTGDGTGQVDVWKWQAEPTSLTSE* | 470 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0805 | 469 | ProSiteProfiles | Zinc finger C3H1-type profile. | 24 | 45 | IPR000571 | GO:0046872 | |
| Vvi3g0805 | 469 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 301 | 340 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | Gene3D | - | 169 | 225 | IPR015943 | GO:0005515 | |
| Vvi3g0805 | 469 | MobiDBLite | consensus disorder prediction | 111 | 135 | - | - | |
| Vvi3g0805 | 469 | SMART | c3hfinal6 | 21 | 44 | IPR000571 | GO:0046872 | |
| Vvi3g0805 | 469 | SMART | c3hfinal6 | 142 | 166 | IPR000571 | GO:0046872 | |
| Vvi3g0805 | 469 | MobiDBLite | consensus disorder prediction | 64 | 101 | - | - | |
| Vvi3g0805 | 469 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 318 | 332 | IPR019775 | - | |
| Vvi3g0805 | 469 | Gene3D | - | 23 | 168 | - | - | |
| Vvi3g0805 | 469 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 178 | 210 | - | - | |
| Vvi3g0805 | 469 | MobiDBLite | consensus disorder prediction | 64 | 135 | - | - | |
| Vvi3g0805 | 469 | Gene3D | - | 228 | 468 | IPR015943 | GO:0005515 | |
| Vvi3g0805 | 469 | PANTHER | - | 23 | 464 | IPR044715 | - | |
| Vvi3g0805 | 469 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 301 | 334 | - | - | |
| Vvi3g0805 | 469 | SUPERFAMILY | WD40 repeat-like | 174 | 461 | IPR036322 | GO:0005515 | |
| Vvi3g0805 | 469 | FunFam | Zinc finger CCCH domain-containing protein 48 | 258 | 466 | - | - | |
| Vvi3g0805 | 469 | SMART | WD40_4 | 334 | 371 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | SMART | WD40_4 | 250 | 287 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | SMART | WD40_4 | 171 | 210 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | SMART | WD40_4 | 375 | 418 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | SMART | WD40_4 | 294 | 331 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | SMART | WD40_4 | 421 | 458 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 178 | 210 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | ProSiteProfiles | Zinc finger C3H1-type profile. | 145 | 167 | IPR000571 | GO:0046872 | |
| Vvi3g0805 | 469 | PRINTS | G protein beta WD-40 repeat signature | 318 | 332 | IPR020472 | - | |
| Vvi3g0805 | 469 | PRINTS | G protein beta WD-40 repeat signature | 197 | 211 | IPR020472 | - | |
| Vvi3g0805 | 469 | PRINTS | G protein beta WD-40 repeat signature | 358 | 372 | IPR020472 | - | |
| Vvi3g0805 | 469 | Pfam | WD domain, G-beta repeat | 297 | 331 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | Pfam | WD domain, G-beta repeat | 175 | 210 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | Pfam | WD domain, G-beta repeat | 336 | 370 | IPR001680 | GO:0005515 | |
| Vvi3g0805 | 469 | SUPERFAMILY | CCCH zinc finger | 143 | 165 | IPR036855 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g0805 | Vvi-Chr3 | 7428428 | 7430945 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0805 | 172 | 370 | Miscellaneous Gene Families | AT5G08390 | 22.768 | 2.29e-06 | 48.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g0805 | - | - | vvi:100244661 | 960.674 |