Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0804 ATGGATTCAACCAATTATAGGATGAACAAAAATAGGAAGAAATCAGACAATTTTGTGGACGGAGTTCGAGAGCATGGGCCTAAGTTCTCTGAAATTGTGAAGGGAAAGTTGAGCTTGGGGGCTAGGATTCTTCAACTTGGGGGAGTGAAGAGAGTTTTCGACCAAATTTTTGGTGTTAGAGAAGGAGAGAAACTATTGAAGGCTTCCCAATGCTATTTATGGACAACAGCAGGCCCTATAGCAGGCCTCCTCTTTATCTCTACTCAAAGGGTTGCCTTTTTCAGTGAAAGATCAATCAAATTTTCTTGTCCAAATGGTGAATTGGTTAGAATCTATTACAAGGTCTCTATCCCACTAAGAAAGATAAAAAGAGCCAACCAAAGCGAGAATGTAGTACATGGAAATTGTTACTGTGGATAA 420 0.3976 MDSTNYRMNKNRKKSDNFVDGVREHGPKFSEIVKGKLSLGARILQLGGVKRVFDQIFGVREGEKLLKASQCYLWTTAGPIAGLLFISTQRVAFFSERSIKFSCPNGELVRIYYKVSIPLRKIKRANQSENVVHGNCYCG* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0804 139 Gene3D - 49 136 IPR011993 -
Vvi3g0804 139 SMART gram2001c 51 129 IPR004182 -
Vvi3g0804 139 Pfam GRAM domain 52 130 IPR004182 -
Vvi3g0804 139 PANTHER GEM-LIKE PROTEIN 2 2 131 IPR037848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0804 Vvi-Chr3 7424912 7425513 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0804 - - vvi:100249798 242.662