Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0801 ATGGTTCTATTAAAAACAAAAAAGTATAATTTTCAGTGTTTGGAGAAGCCTCTCAGACCTCAGTATGGTGGAGGGATGATATTGAATCCTGATTTGAATGATGGGTTGAAAGGATGGTCTGTGTCTGGAGGTGCGAAGATAGAAGAAAGAGTGTCAGGAGGAGGCAACAGGTTCATTGTGGCTCATAGCAGAAGCCACAAGAATGACAGTGTTTCACAGAAGCTTTACATGAAGAAGGACAAGCTCTACACCTTCTCTGCTTGGATACAAGTTAGCAGCAGAAGTGCTTCTGTGGCAGCTGCTTTCAGAACAAATGGCGGGGTGAAATATGCAGGTGCTATTATTGCCGAGACCGGGTGCTGGTCCATGCTTAAAGGTGGCCTCACTGTGGAGGGTTCTGGCCCTGCTCAGCTCTATTTTGAGAGCAATGACACATCAGTTGAGATATGGGTGGATAGCGTCTCTTTACAACCCTTCACTAAAGAAGAGTGGAGGACCCATCAAGATCAAAGCGTTGAGAAGACACGCAAGACAAAAGTGAGACTCCAAGCAGTTGATGGCAGAGGGAATCCAGTAGCAGGCGCAAAAATGGCAGTAACACTAGCCAAACGGAGTTTCCCATTTGGTGCTGTTATTTCTGACTACATTCTCCAAAACACTGCCTTCCAGAATTGGTTCACCTCAAGGTTCTCGGTTGCAACCTTTGCAAATGAAATGAAGTGGTACAGCACCGAAAACTCCCGAGGTGTGGAGAATTACAAGGTCGCTGACGACATGCTTCAGTTCTGCAAACAAAACGGCATCGCCGTTCGCGGCCACAACATTTTATGGGATGATCCCAAGTACCAACCCAGTTGGGTTAACTCACTTTCCCCTGGTGATCTCCAAGCTGCTGTCGATAGACGGATAAACTCCATAGCCAGCCGATACAAAGGCCAAGTTATTGCTTGGGATGTTGTTAATGAAAATTTACATTTTTCATTCTTTGAGGACAGGCTAGGGGCTAGTGCTTCTGCAGCTGCGTTCCAGAAGACTCGCCAAATTGATGGAACAGTTGAGTTGTTCATGAATGAGTATAATACTATAGAGGAGAGAGGAGATGGTGCATCATCACCAGCTAAGTACCTTCAAAAGCTGGGGGAGATTCAAGCATTTCTGGGTGGTGGGTCTGGGCCGTTGGCAATCGGACTTGAGGGTCACTTTGGATCTGCTCCAAACCTTCCCTACGTGAGATCTTCAATTGATACTCTTGCTGCCAAAAATTTGCCCATTTGGGTGACAGAAGTGGATGTTAGCAACATGACTGACCAGGCAATGCACTTTCAGCAGATTCTGGAGGAGGTTCATGCACACCCAGCAGTGAAGGGAATTGTAACGTGGGGAACATGGGATCCAAGGGGCTGCTACAGGATGTGTTTGACTGATGGCAATTTTAACAACTTGCCCACAGGAGATGTTCTGGACAAGATATTGCGGCAGTGGAGTATTGCGGGGATGGTAGGCGTGACGGATGCTAATGGTGTCTTTGAAGCTTCTCTTTTCCATGGAGATTATGAAGTTACAATTAGTCATCCGACTGTGATGAAATCCTCCTTGACTCAGAGCTTTAAGGTGGCACCATCTGCAGATACTTCACACCAAACAACAGTACTGCTTGTTGAAGTGTCTCCATGA 1674 0.4642 MVLLKTKKYNFQCLEKPLRPQYGGGMILNPDLNDGLKGWSVSGGAKIEERVSGGGNRFIVAHSRSHKNDSVSQKLYMKKDKLYTFSAWIQVSSRSASVAAAFRTNGGVKYAGAIIAETGCWSMLKGGLTVEGSGPAQLYFESNDTSVEIWVDSVSLQPFTKEEWRTHQDQSVEKTRKTKVRLQAVDGRGNPVAGAKMAVTLAKRSFPFGAVISDYILQNTAFQNWFTSRFSVATFANEMKWYSTENSRGVENYKVADDMLQFCKQNGIAVRGHNILWDDPKYQPSWVNSLSPGDLQAAVDRRINSIASRYKGQVIAWDVVNENLHFSFFEDRLGASASAAAFQKTRQIDGTVELFMNEYNTIEERGDGASSPAKYLQKLGEIQAFLGGGSGPLAIGLEGHFGSAPNLPYVRSSIDTLAAKNLPIWVTEVDVSNMTDQAMHFQQILEEVHAHPAVKGIVTWGTWDPRGCYRMCLTDGNFNNLPTGDVLDKILRQWSIAGMVGVTDANGVFEASLFHGDYEVTISHPTVMKSSLTQSFKVAPSADTSHQTTVLLVEVSP* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0801 557 Pfam Carbohydrate binding domain 26 142 IPR003305 GO:0016798
Vvi3g0801 557 SUPERFAMILY (Trans)glycosidases 190 495 IPR017853 -
Vvi3g0801 557 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 195 490 IPR001000 GO:0004553|GO:0005975
Vvi3g0801 557 SUPERFAMILY Galactose-binding domain-like 24 158 IPR008979 -
Vvi3g0801 557 Gene3D - 14 160 - -
Vvi3g0801 557 Pfam Glycosyl hydrolase family 10 201 465 IPR001000 GO:0004553|GO:0005975
Vvi3g0801 557 SMART glyco_10 239 491 IPR001000 GO:0004553|GO:0005975
Vvi3g0801 557 PANTHER GLYCOSYL HYDROLASE 13 545 IPR044846 GO:0004553|GO:0005975
Vvi3g0801 557 Gene3D Glycosidases 194 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0801 Vvi-Chr3 7389633 7402240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0801 12 553 Glycoside Hydrolase AT4G33840 55.963 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0801 - - vvi:100265242 1104.74