Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0800 ATGAAGTTTGGAGGAGAGAGCTTACTACTGCTGTGTTTGGCGAATCCTCACAAGCCTCAATATGGAGGAGGAATCATTAGAAACCCTGAGTTGAATCAAGGCTTGAAAGGATGGTCTACATTTGGAGGTGCAAAAATAGAAAGAAGAGAATCAGGAGGCAACCATTTCATTGTGGCCCATAGCAGAAACCAAACATATGGTAGTTTTTCACAGAAACTTTACCTGCAGAAAGACAAGCTCTACACCTTCTCTGCTTGGATCCAAGTGAGTGGTGGAAATGCTGCAGTGGCAGCTGTTTTCAAAACAAGCGATGGGTTCAAACATGCGGGCGCAATTTTCGCTGAGTCTGGGTGCTGGTCCATGCTTAAGGGTGGCCTCACCATGAAATCATCAGGCCCTGCTGACCTCTTCTTTGAGAGCAAAAATACAAAGGTTGAAATATGGGTGGACAGCATCTCATTGCAACCCTTCATCCAAGAGCAATGGAAGTCTCATCAAGATCAAAGCATTGAGAAGACACGAAAGACAAAGGTGAGAATTCAAGCAATTGATGCTAGAGGAAATCCACTTCCGGGTGCAACAGTGCAAGCTCGTCAACAGAAATTGAGTTTCCCATTTGGTAATGCTATGAACAAGTACATTCTTGATAACCCTGCCCACCAAAATTGGTTCACCTCGAGGTTCACCGCCACAGCATTTGAAGATGCACTGAAATGGTACACCAACGAACCCTCCCCTGGTAAGGAGGACTACTCCGATGCTGACGCCTTGTTTCAATTCTCTGAACAAAACCAAATCGCAGTCCGGGGCCACAATATTTTATGGGACGACCCCAAATACCTACCTGGGTGGTTGTTGTCTCTTTCGCCTAGCCAAATCCGATCAGATGCAGACAAAAGGATAAATTCTGTTGTCCAACGATACATAGGAAAGGTTAATTCATGGGATGTTGTGAATGAAAATCTGCATACTTCTTTCTTTGAGGACAAGCTTGGGCCCAATGCTTCTGCAGTTTTCTTCCAAGAGACTCGCCAGCTTGATAAAACAACCCCCTTGTTCATGAATGAGTATAATACTTTGGAAAATGGTGGAGATCCTCTCTCCACACCTGCTAAATACATTCAAAAGCTGAGAGATATTCAATCTTTTTCCCCGGACATTGGTTCAGTTGGAATTGGGCTTCAGGGTCATTTCCACACCCCAGACCTTGCTTACATGAGATCCTCCCTTGATACCCTTGCTGCAGCAAAACTGCCCATTTGGATAACTGAACTAGATGTTGCAAGCAGCCCCGATCAGGCATCATACTTAGAACAGGTTCTCTCCGAAGCACATGCTCATCCGGCAGTTGTTGGGATAGTGATGTGGGCGGCATGGAAACCAGAGGGCTGTTTCCGGATGTGTTTGACTGATGGCCAATTCAAGAACTTGGCCACAGGAGATGTTGTAGACAAGCTGATCAGCCAGTGGACAGGTCGGTTTGTGGGGATGACTAATGCCGATGGTTTCTTGGAAACCTCCCTTTTCCACGGAGATTATGAAGTCTCGATCAGTCATCCGACCCTGAAGAATTCGTCCTTGATTCATGGCTTTAAGGTTGCACCAACAGATCATATGTCCCAGGAAAAAGAAATGCTTGTTACGTTGTCTGCATGA 1656 0.4559 MKFGGESLLLLCLANPHKPQYGGGIIRNPELNQGLKGWSTFGGAKIERRESGGNHFIVAHSRNQTYGSFSQKLYLQKDKLYTFSAWIQVSGGNAAVAAVFKTSDGFKHAGAIFAESGCWSMLKGGLTMKSSGPADLFFESKNTKVEIWVDSISLQPFIQEQWKSHQDQSIEKTRKTKVRIQAIDARGNPLPGATVQARQQKLSFPFGNAMNKYILDNPAHQNWFTSRFTATAFEDALKWYTNEPSPGKEDYSDADALFQFSEQNQIAVRGHNILWDDPKYLPGWLLSLSPSQIRSDADKRINSVVQRYIGKVNSWDVVNENLHTSFFEDKLGPNASAVFFQETRQLDKTTPLFMNEYNTLENGGDPLSTPAKYIQKLRDIQSFSPDIGSVGIGLQGHFHTPDLAYMRSSLDTLAAAKLPIWITELDVASSPDQASYLEQVLSEAHAHPAVVGIVMWAAWKPEGCFRMCLTDGQFKNLATGDVVDKLISQWTGRFVGMTNADGFLETSLFHGDYEVSISHPTLKNSSLIHGFKVAPTDHMSQEKEMLVTLSA* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0800 551 SMART glyco_10 237 486 IPR001000 GO:0004553|GO:0005975
Vvi3g0800 551 Pfam Glycosyl hydrolase family 10 202 457 IPR001000 GO:0004553|GO:0005975
Vvi3g0800 551 PANTHER GLYCOSYL HYDROLASE 12 542 IPR044846 GO:0004553|GO:0005975
Vvi3g0800 551 SUPERFAMILY (Trans)glycosidases 188 491 IPR017853 -
Vvi3g0800 551 Gene3D - 13 157 - -
Vvi3g0800 551 SUPERFAMILY Galactose-binding domain-like 22 155 IPR008979 -
Vvi3g0800 551 Gene3D Glycosidases 192 494 - -
Vvi3g0800 551 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 196 485 IPR001000 GO:0004553|GO:0005975
Vvi3g0800 551 Pfam Carbohydrate binding domain 25 136 IPR003305 GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0800 Vvi-Chr3 7385745 7389061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0800 7 549 Glycoside Hydrolase AT4G33840 55.556 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0800 - - vvi:100242953 1115.91