Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0799 ATGAGCTCATCGGGTCCCGATTTGGTATGCCAACTGGACAACGTCCAAGCTCTTCTCTTTCTAAGATCTCAGCTTCTCTCCGTTGAGGATTTGGAGAATGGCATCTATATCTCATTCTTCGGACTGGCAAATGATGCTTTGTCCTATGATTACACAGCCAGTTTGGAGTGTTTGGAGAAGCCACACAAACCCCAGTATGGAGGAGGAATCATTTTAAACCCTGAGTTGAACCATGGCTTGAAAGGATGGTCTGCTTTTGGAGGTGCAGAAATGGAAAATAGAGCATCAGGAGGCAACACCTTCATTGTGGCTCATAGCAGAAAACAAATGAATGATAGCATTTCACAGAAACTTCACTTGCACAAGGACAAGCTTTACACATTCTCTGCTTGGATACAAGTGAGCAGCGGAAACACCCCAGTAACAGCTGTTTTCAGAACAAATTCTGGTCCTCAATATGCTGGTGCTGTTTTTGCTGAATCTGGATGCTGGTCCATGCTCAAGGGTGGCCTCACCGTCGATTCTTCGGGCCCTGCTGAGCTCTATTTCGAGAGCGAAGATACATCGGTTGAGATCTGGGTGGATAGCATCTCACTGCAACCATTCACTCAAGAACAATGGACATCTCATCAAGATCAAAGCATTGAGAAGACGCGAAAGAGAAAGGTGAGACTCCAAGCAACTGACGCCCATGGAAATCCCATAGCAGGCGCAAAAATGGCTATTAAACAAAACAAACTGAATTTCCCATTCGGTAGTGCTATCAGTAAGTACATCCTCAGCAACACTGCCTACCAGAATTGGTTCACCTCAAGATTTACGGTCACGGTATTCGAAAATGAACTCAAGTGGTATAGCACAGAATGGTCCCGTGGCAAGGAGGACTATTCAGTCCCGGATGCCATGCTTCGATTTGCCAAGCAACACGGCCTTGCAGTCCGCGGCCACAATATTTTATGGGACAATGGAAATAACCAACCCAGTTGGGTTCCTTCCCTTTCAAATAGTGAACTCCAAGCGGCGGTTGACAAAAGGATAAACTCAGTTGTGAGGCGCTACTCAGGCCAGTTCATTGGGTGGGATGTTGTTAATGAAAATTTGCATTTTTCCTTCTTTGAAAGCAGGCTGGGGGCCAAAGCTACCGGCGTTGCTTTCCAGAAGACTCGCCAACTTGATGGAAGAACCACCTTGTTCATGAATGAATATGATACGATAGAGAAGAGTGGTAAGGGCTCAGCCTCTCCGGACAAGTACCTTCAGAAGCTGAGAGAGATCCAATCTTTTCTCCGTGGTGGTGGAAATCTGGGTATTGGTCTTGAGGGTCATTTTCGGACTCCAAACATTCCCTATATGAGATCTGCAATTGATAAGCTTGCTGCTGCAAAATTTCCCATTTGGATTACGGAACTGGATGTCGACCCCAGCCAGCCAATGCATTTAGATCAGGTTCTCAGGGAGGCACATGCTCACCCGGCCATCCATGGGATAGTAATGTGGGCAGCATGGAAACCAGAGGGCTGTTTCCGGATGTGTTTGACTGATAGCAATTTCAAGAACACGCCCACGGGAGATGTTGTAGACAAGCTATTGCAGCAGTGGACTCATGCGGGATTGGTGGGAACTACTGATGCTGATGGCTTTTTTGAAACTTCCCTTTTTCATGGAGACTATGAAGTAGCAATCACTCATCCAACTGTGACGAATTCCTCCTTGATTCACAGCTTTAAGGTGGCATCATCAACAGATATTTCTCCAGAATCAGCACTGCTTGTTAAAGTGTCTGCGTGA 1788 0.4631 MSSSGPDLVCQLDNVQALLFLRSQLLSVEDLENGIYISFFGLANDALSYDYTASLECLEKPHKPQYGGGIILNPELNHGLKGWSAFGGAEMENRASGGNTFIVAHSRKQMNDSISQKLHLHKDKLYTFSAWIQVSSGNTPVTAVFRTNSGPQYAGAVFAESGCWSMLKGGLTVDSSGPAELYFESEDTSVEIWVDSISLQPFTQEQWTSHQDQSIEKTRKRKVRLQATDAHGNPIAGAKMAIKQNKLNFPFGSAISKYILSNTAYQNWFTSRFTVTVFENELKWYSTEWSRGKEDYSVPDAMLRFAKQHGLAVRGHNILWDNGNNQPSWVPSLSNSELQAAVDKRINSVVRRYSGQFIGWDVVNENLHFSFFESRLGAKATGVAFQKTRQLDGRTTLFMNEYDTIEKSGKGSASPDKYLQKLREIQSFLRGGGNLGIGLEGHFRTPNIPYMRSAIDKLAAAKFPIWITELDVDPSQPMHLDQVLREAHAHPAIHGIVMWAAWKPEGCFRMCLTDSNFKNTPTGDVVDKLLQQWTHAGLVGTTDADGFFETSLFHGDYEVAITHPTVTNSSLIHSFKVASSTDISPESALLVKVSA* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0799 595 SUPERFAMILY (Trans)glycosidases 233 535 IPR017853 -
Vvi3g0799 595 PANTHER GLYCOSYL HYDROLASE 48 582 IPR044846 GO:0004553|GO:0005975
Vvi3g0799 595 SUPERFAMILY Galactose-binding domain-like 67 200 IPR008979 -
Vvi3g0799 595 Gene3D - 58 203 - -
Vvi3g0799 595 Pfam Glycosyl hydrolase family 10 247 487 IPR001000 GO:0004553|GO:0005975
Vvi3g0799 595 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 236 529 IPR001000 GO:0004553|GO:0005975
Vvi3g0799 595 Gene3D Glycosidases 236 541 - -
Vvi3g0799 595 SMART glyco_10 282 530 IPR001000 GO:0004553|GO:0005975
Vvi3g0799 595 Pfam Carbohydrate binding domain 70 186 IPR003305 GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0799 Vvi-Chr3 7374686 7382382 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0799 46 584 Glycoside Hydrolase AT4G33860 60.623 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0799 - - vvi:100248080 1134.78