Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0797 ATGGAGAAGGCGGAGGCCGAGCCATCAGCCTCGGCAGATTCAGCCCGGCCATGGCAGTCCTACACCACCGTATACACTAACGCCAAAGCAGGGATGGATGGGGTTGACAAGGAGAAAGTGCAGAGGACAGTTTATGAGATGAGCAAAGGGTCAAAGTATTTTGAGAATGAGGAGCGCAAGGAGGCTTTCATCAGGCAGAAGATCGACAACATGCGTGCTCGGTGCGCAAAACTCTCTGCCTCTGACATATCTCATTATCAAATGGTTGCTGATAAAAGAATTTTGGAGCTAGAAGCTACGCGTGATCTATCAAGGATTTGGCTACATGTAGATATGGATGCTTTCTATGCTGCTGTTGAAACATTAGATAATCCTTCATTAAGGGGCAGACCAATGGCAGTTGGTGGCATGTCTATGATCTCCACCGCTAATTATGAGGCCCGAAAATTTGGGGTTCGTGCTGCAATGCCTGGTTTCATTGCACGTAAATTATGCCCAGAGTTGATTTTTGTTCCCACAGACTTCAAGAAGTATACTTATTATAGTGATTTAACTAGAAAAGTTTTCCAGAAGTACGATCCCAACTTCATGGCAGCTAGTTTGGATGAAGCCTACCTTGATATTACTGAGGTCTGCAATGAGAGGGACCTTACTAGTGGAGAAATTGCTGAAGAACTCAGAACAAGTGTTCATGAAGTGACTGGTCTTACATGCAGCGCCGGAGTGGCACCAAACCGCTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCAAATGGACAGTTTGTTTTACCGAGTAATCGGATGGCGGTCATGACTTTTATTTCCTCACTTCCCATACGAAAGATTGGGGGCATTGGTAAAGTGACTGAACATATTTTAAGTGGTGTTTTTGGAATTAATACATGTGAGGAGATGCTTCAAAAGGGTGGTTTCCTCTGTGCACTATTTTCTCGTTCTTCTGCAGATTTTTTCCTCTCTGTGGGACTGGGACTTGGGAAAACGGATACACCTCAAGTTAGGTTCCGGAAAAGTATAAGTAATGAGAGGACATTTTCAGCCACTGATGACACTGCATTGCTTTATCAGAAATTAGCTGAGCTTTCGGAGATGCTATCTATTGATATGCAAAAAGAAGGACTTTCTGGAAGAACATTGACTCTGAAACTGAAGACTGCATCTTTTGAGGTTCGGAGTAGAGCTGTGACTATGCAAAAATATATTTGCTCAAGAGAGGATATTCTGAATCATGCTTTGAAGCTACTAAATGCTGAGCTTCCTCTATCTTTAAGATTGATTGGCCTGCGCATATCTCATTTCAATGAGGACAAGGATGGTCATCTATCTGATCCAACACAAAAGACTCTTGCTAACTTTATTATATCAGGAGATGCTTCTGGAAAGAATGTGTGTGAACACAGTTTGTTGGGCTCAGATACAAGTGATAGCCACTTCATGGTTGACCCAGAAAATGATCTTTCTATTGACAACCATGAGACATGTCATTATGTTTCTGAAGACCTGTTGGACAGCAACCTATTATCAGATCTTGATCACTGTAATTTTAATTTGAGCAATAATTCTGGTAAAATAGACAACAATAACGAACTTCCCCTGAATGGATCTGTGGCTAAGGTGAATGCCCCTAATGTTGTAGGGTGTGCTCCAAAATCCCATCAAATCAAAGTATCACATTTAGTAGAGGCAGATTCTTTTTCTTTCTCTGAACAGTGTGAGTCAAACAGGCCAGACAGAGCGAGAAGGACCAACAATGATTTGGATGATGGAGTTCCTTCTTCAAATCAGAAAGAGCAATTTTTGTGGGTGAATGACTACAAATGTTCACTATGTGGGATTGAATTACCTCCTAATTTTGTTGAGGAAAGGCAAGAACATTTTGATTTTCATCTTGCTGAGAAGTTGCAGAAAGAGGAATCTGACAACTCAAGAAACCTTATGTTGAATCAAAGGTTTTCCCAGAGAGACCACACTGCAAGCCAAAGAAGACATAAGAGGCACAAGTCTTCGAAGAAAGAAGGCAGCAAGTCATCTCAAAAAGAAAGCAAACATCTTCCTATTGATATGTTCTTTGTGAAAAGTAACCAGAACTTCTAG 2115 0.4151 MEKAEAEPSASADSARPWQSYTTVYTNAKAGMDGVDKEKVQRTVYEMSKGSKYFENEERKEAFIRQKIDNMRARCAKLSASDISHYQMVADKRILELEATRDLSRIWLHVDMDAFYAAVETLDNPSLRGRPMAVGGMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNERDLTSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPSNRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGINTCEEMLQKGGFLCALFSRSSADFFLSVGLGLGKTDTPQVRFRKSISNERTFSATDDTALLYQKLAELSEMLSIDMQKEGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALKLLNAELPLSLRLIGLRISHFNEDKDGHLSDPTQKTLANFIISGDASGKNVCEHSLLGSDTSDSHFMVDPENDLSIDNHETCHYVSEDLLDSNLLSDLDHCNFNLSNNSGKIDNNNELPLNGSVAKVNAPNVVGCAPKSHQIKVSHLVEADSFSFSEQCESNRPDRARRTNNDLDDGVPSSNQKEQFLWVNDYKCSLCGIELPPNFVEERQEHFDFHLAEKLQKEESDNSRNLMLNQRFSQRDHTASQRRHKRHKSSKKEGSKSSQKESKHLPIDMFFVKSNQNF* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0797 704 Gene3D - 124 172 - -
Vvi3g0797 704 FunFam DNA polymerase kappa subunit 24 114 - -
Vvi3g0797 704 Gene3D - 112 262 IPR043128 -
Vvi3g0797 704 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 18 698 - -
Vvi3g0797 704 Gene3D - 25 111 - -
Vvi3g0797 704 FunFam DNA polymerase kappa subunit 167 262 - -
Vvi3g0797 704 FunFam Polymerase (DNA directed) kappa 117 169 - -
Vvi3g0797 704 ProSiteProfiles Zinc finger UBZ3-type profile. 607 644 IPR041298 -
Vvi3g0797 704 MobiDBLite consensus disorder prediction 577 600 - -
Vvi3g0797 704 Pfam Ubiquitin-Binding Zinc Finger 611 644 IPR041298 -
Vvi3g0797 704 FunFam DNA polymerase kappa 251 336 - -
Vvi3g0797 704 Gene3D - 263 336 - -
Vvi3g0797 704 Hamap DNA polymerase IV [dinB]. 104 450 IPR022880 GO:0003887
Vvi3g0797 704 SUPERFAMILY DNA/RNA polymerases 81 335 IPR043502 -
Vvi3g0797 704 ProSiteProfiles UmuC domain profile. 107 287 IPR001126 GO:0006281
Vvi3g0797 704 MobiDBLite consensus disorder prediction 644 692 - -
Vvi3g0797 704 FunFam DNA polymerase IV 340 447 - -
Vvi3g0797 704 Pfam impB/mucB/samB family C-terminal domain 343 444 IPR017961 GO:0003684|GO:0006281
Vvi3g0797 704 MobiDBLite consensus disorder prediction 664 679 - -
Vvi3g0797 704 Pfam impB/mucB/samB family 110 254 IPR001126 GO:0006281
Vvi3g0797 704 PIRSF DNA_pol_eta 216 426 - -
Vvi3g0797 704 PIRSF DNA_pol_eta 99 219 - -
Vvi3g0797 704 PIRSF DNA_pol_eta 490 701 - -
Vvi3g0797 704 CDD PolY_Pol_IV_kappa 108 440 IPR022880 GO:0003887
Vvi3g0797 704 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 341 438 IPR036775 GO:0003684|GO:0006281
Vvi3g0797 704 Coils Coil 54 74 - -
Vvi3g0797 704 Gene3D - 341 447 IPR036775 GO:0003684|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0797 Vvi-Chr3 7326096 7339940 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0797 K03511 - vvi:100253205 1361.67