Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0793 ATGGCAATCTCATCAATATTCGACGGCGGAGAGCTCAGAAGGCAGTTTCACAGTGCCGGAATAAGCCCTAACTTCATCCCTTTCATTTGGAAGTACGTGGTTCAAAACCCTAACTGCGATTGGGATGACATTACTTCGTTGCCTTCCGCTGCATACCCTCTCCTTCGGTCACACTTCAAACCTTCTACTTCCAGTCTCCACACGGTCATCGATTCGTCCGACAATGTCACCACCAAACTCCTCATCAAGTTGCAGAATGGATCTTTTGTAGAAGCTGTGATTATGAGGTATGACACACGTTTAGGGAAGTATGGTGGAAAACCTCGTCCTGGAGGTCCAAGGTCAACCTTGTGCATATCATCTCAGGTGGGTTGTAAAATGGGCTGCAAATTCTGTGCAACTGGAAGCATGGGATTTAAAAGCAATCTATCCTCAGGAGAAATTGTGGAACAATTAGTGCATGCTTCTCACTTTTCGCAAATACGGAATGTTGTGTTCATGGGAATGGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCTATCCATATCATGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTATCAACGGTAGGGATTATTCATGCTATCAACAAGCTCCAAAGTGATCTACCAAATTTGAACTTGGCAGTATCACTGCATGCACCAGTTCAAGATATCCGTTGTCAGATAATGCCTGCAGCTCGAGCTTTTCCTTTGGAAAAGCTCATGGATACCCTGCGGACCTACCAAACGAATAGTGGACAGAAAATCTTTATTGAGTACATAATGCTTGATGAGGTGAATGATGAAGAGCAACATGCTCACCAGCTTGGGAAATTGCTGGAGACATTTCAAGTGGTTGTAAATCTTATACCTTTCAATCCCATTGGCAATCTAAGTTATTTTAAAACCAGTAGCGAACAGAAAGTTGCAAGATTTCAGAAAATTCTTAGAGGTACTTATAACATCAGGACAACAGTACGCAAGCAAATGGGTCAAGACATAAGTGGTGCATGTGGTCAGTTGGTGGTTAATCAACCAGATAAGAGGTCTACAGGAAGTGCTGGTCTCTTAACCGACATTGAAGATTTGCATCTTTGA 1119 0.4281 MAISSIFDGGELRRQFHSAGISPNFIPFIWKYVVQNPNCDWDDITSLPSAAYPLLRSHFKPSTSSLHTVIDSSDNVTTKLLIKLQNGSFVEAVIMRYDTRLGKYGGKPRPGGPRSTLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASHFSQIRNVVFMGMGEPLNNYSALVEAIHIMQGSPFQLSPKKITVSTVGIIHAINKLQSDLPNLNLAVSLHAPVQDIRCQIMPAARAFPLEKLMDTLRTYQTNSGQKIFIEYIMLDEVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGNLSYFKTSSEQKVARFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNQPDKRSTGSAGLLTDIEDLHL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0793 372 CDD Radical_SAM 124 325 - -
Vvi3g0793 372 FunFam 23S rRNA methyltransferase 64 355 - -
Vvi3g0793 372 SFLD adenosine C2 methyltransferase (RlmN-like) 27 357 IPR004383 GO:0006364|GO:0008173
Vvi3g0793 372 PIRSF Cfr 7 364 IPR004383 GO:0006364|GO:0008173
Vvi3g0793 372 PANTHER 23S RRNA METHYLTRANSFERASE 7 356 IPR040072 -
Vvi3g0793 372 ProSiteProfiles Radical SAM core domain profile. 111 340 IPR007197 GO:0003824|GO:0051536
Vvi3g0793 372 Pfam 4Fe-4S single cluster domain 124 211 - -
Vvi3g0793 372 Pfam Radical SAM superfamily 120 278 IPR007197 GO:0003824|GO:0051536
Vvi3g0793 372 SFLD methyltransferase (Class A) 27 357 - -
Vvi3g0793 372 Gene3D Aldolase class I 65 356 IPR013785 -
Vvi3g0793 372 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 15 351 IPR027492 GO:0030488|GO:0070475
Vvi3g0793 372 SUPERFAMILY Radical SAM enzymes 113 326 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0793 - - vvi:100259962 735.717