Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0790 ATGGATAAAGCTTTAGACAGCTTATCTCATAAAAGGGGATCGGTAAGGGAGGAGGCACTGTGTTCAATAATCACAGATTCTACTGCCAAAGTGCAAGTTCAGTTTGCAGAAAAGAACTTTGTTACTTTGGTGTATCGAAGCCTAGCTTTACTAAAGAAGGGGTCTCCCAAAGAAGTTTCTTTAGCTACTCAGGCCATTGCTTTGTTTGCCATCACCTTGGGTCCTGGGGGTAATACACATGAAATATATAAAGATTCACTTCCTCCACTTTCACAGGTTCTCGAATCTGGTTCTGAATCATCCAAGATATCATCTATATTAGATTGTTTGGCTATTGTCACTTTTGTTGGTGCAAAGGATTTTGAGGAGACTGAAAAAAGTATGCAAATTATATGGAAACTCATTCAGCCGGTAGCCTTGAATGTCAATGCAAGAAAACATTCACCAGCCATTCTAGCTGCTGCAATTTCTGCATGGTCATTCATTCTGACAACAGTGGATGGATGGAGGCTTAATTACAAGTATTGCCGAGGGGCTATTTCTTATTTGTCAGATCTAATAGAGTATGATGATGAATCCGTCCGTATTGCTGCCCTCGAAGCACTGGCTTTGATATTCGAATCAGGTTGTTTTAATAGCTTGTCAACTGAAGCTAAATGTTCTAGTAGTTGCTTGATTCATGAAGGGAATACTTCCACAAATGGATATTCACCTATACAAGAAATGAAAGACAACATCCTACATCGAGTGAGGAGACTTTCTTTAAAAGACGAAGTTGACAAAGATCGCATGAGTGATTGGTTAAAAGTTTTTGAGGATGGTTGCTGTCCCAAAACCTTGGTGATAAATTGGCAAAATATGCTCAAATCATTTGCATGGTATCGACTGCTACAGATTAAGTTTATGAAGCGTATTCTTGGGAGTGGATTTAACAAACACATGCAGGAAAATGAGTTCCTCCATGAACTCTTTGAGATTGTTACACCAAAAAGAGAGGATGTTTCAGGCTATGGGTGTCAACTGTATGAACTTGATAGTAAAGAGGTCATTGCTGAGTACTACGAACCTGAACTAAGAAAGAACAACAAAAGCAGCATTCAGAGAATGTTCATGTCACCCAACTCCTTCCACAACAAGGCAATGACTCAGCTACTGAACAAGCGGCGCATGTTATCACAGAAAAGGCGCAATGGTCACTATGTAGTTGATGATGAATGTTGA 1221 0.3964 MDKALDSLSHKRGSVREEALCSIITDSTAKVQVQFAEKNFVTLVYRSLALLKKGSPKEVSLATQAIALFAITLGPGGNTHEIYKDSLPPLSQVLESGSESSKISSILDCLAIVTFVGAKDFEETEKSMQIIWKLIQPVALNVNARKHSPAILAAAISAWSFILTTVDGWRLNYKYCRGAISYLSDLIEYDDESVRIAALEALALIFESGCFNSLSTEAKCSSSCLIHEGNTSTNGYSPIQEMKDNILHRVRRLSLKDEVDKDRMSDWLKVFEDGCCPKTLVINWQNMLKSFAWYRLLQIKFMKRILGSGFNKHMQENEFLHELFEIVTPKREDVSGYGCQLYELDSKEVIAEYYEPELRKNNKSSIQRMFMSPNSFHNKAMTQLLNKRRMLSQKRRNGHYVVDDEC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0790 406 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 2 397 IPR039777 -
Vvi3g0790 406 SUPERFAMILY ARM repeat 8 209 IPR016024 -
Vvi3g0790 406 Gene3D - 2 229 IPR011989 -
Vvi3g0790 406 Pfam Interferon-related developmental regulator (IFRD) 2 254 IPR007701 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0790 Vvi-Chr3 7224093 7229438 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0790 - - vvi:100266897 796.964