Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0789 ATGGCGTTTGGCTGGCCTTCAACTATAAAAAACAATGCAAGTGCTTCTGATCATCTCCCAAGCAAAGAAGCCATGAAGAAGAACCAACTAATTCTGTTGCCCATTTTCCTGTCACTGCCGCTCCTAGCAATCTCACAACCTACTCACCGATACGCATGCGATAGAACCGATCCCAACTCGAGCCAATTTCCATTCTGTAACACCTCCTTACCTTACCAGGACCGAGCCAGCGACCTAGTGTCGCGCCTCACCCTCCAAGAGAAGGCGAAGCAACTAATAAACAGTGCCACAGGTATTTCTAGGCTTGGTGTGCCCGATTACGAATGGTGGTCTGAAGCACTTCATGGGGTCTCAAACAGTGGGATTGGGGTGCATTTTCATGATCCCATCCCTGCTGTGACTATTTTTCCAGCAGTGATTCTCTCGGCTGCTAGTTTCAATGAGTCATTGTGGTACACGATGGGGCAGGTTGTGTCCACTGAAGGTAGAGCCATGTACAATGTAGGTCAAGCTGGGCTGACATATTGGAGTCCTAATGTTAACATTTTTCGTGACCCCAGATGGGGAAGGGGCCAGGAGACTCCAGGTGAGGACCCCCTGGTTGTTTCACGGTATGCTGTAAACTATGTCCGGGGTTTACAAGAAGTAGGTAAGGAGGGAAACTTTGCTGCTGATCGCCTCAAGGTTTCAAGCTGCTGTAAACACTACACTGCCTATGATGTTGATAAGTGGAAAGGGGTTGATCGATTTCATTTTGACGCAAAGGTGACATTGCAGGACCTAGAAGATACATATCAGCCACCATTCAAGAGCTGTGTAGAGGAGGGGCACGTAAGCAGTGTAATGTGTTCATACAATAGAGTAAATGGAGTTCCCACCTGCGCCAACCCAGAACTGCTCAAAGGGGTGATCAGAGACCAATGGGGTCTAGATGGATACATTGTTTCTGATTGTGACTCCATAATGGTATATCACGAGAGGATGAATTACACAGAAACACCAGAAGATGCGGTGGCTCTTGCCTTGAAAGCGGGTTTAAACTTGAATTGTGGATCTTATCTTGGTGACTATACTAAGAATGCAGTTAACTTGGGAAAGGTAAAAGAATCTATTGTCAACCAGGCCTTGATATACAACTACATAGTCCTTATGAGGCTTGGCTTCTTTGATGGGGACCCAACAATGCTCCCATTTGGGAAAATGGGGCCATCCGACGTGTGCACCGTTGATCATCAACTGTTGGCTCTGGATGCTGCAAAGCAGGGAATAGTCTTGCTGCATAACAATGGAGCCCTTCCATTGTCCCCAAATACCACCAAGACATTAGCTGTTATAGGACCTAATGCTGATGCAACCAATACCATGTTAAGCAACTATGCTGGTGTACCATGTCGATACACTAGTCCTTTACAAGGACTGCAGAAATATGTGTCAGCTGTGAGTTATGAGAAAGGGTGTGCCAATGTGAGCTGCAGTGAAGAAACCCTGATTGAGGGGGCAGCCAGCATTGCATCCATGGCTGATGCCACTGTGGTGGTTGTGGGCCTTGATCTATTCATTGAGGCAGAAGACCTTGACAGAGTGAACTTGACCTTACCTGGGTTTCAAGAGAAGCTTGTGATGGAAGCGGCTAAGGCAGCAAACGGGACAGTGATTCTTGTTGTTATGTCAGCTGGCCCTGTTGACATTTCCTTTGTGAAGAATGTGAGCAAGATTGGGGGGATCCTATGGGTCGGGTACCCAGGTCAAGCAGGAGGTGATGCCATATCTCAAGTCATATTTGGAGACTACAATCCAGGTGGAAGGTCCCCATTTACATGGTACCCTCAAGAGTATGTGGATCAAGTTCCAATGACTGATATGAACATGAGACCTAATGCCACTTCAAACTTCCCAGGAAGAACCTACCGCTTCTATACAGGGAAATCGTTATACCAGTTCGGGCATGGCCTAAGCTACTCAACATTTTACAAGTTCATAAAATCAGCCCCCACCACCGTTCTAGTCCATTTACTGCCCCAGATGGACATGCCTAACATTTTCTCTTCCAATTACCCCACAATGCCAAACCCCAATACTAATGGCCAAGCCATTGATATCTCAGCCATAGACTGCAGGAACTTGAGCAATATTGATATAGTGATTGGAGTGAAGAATGCGGGCGAAATTGATGGTACGCATGTTGTGCTAGCGTTTTGGAAGCCACCAAGGTCAGGAGTGAGGGGGGCACCAGGAGTGGAGCTGGTGGGGTTTGAGAGAGTGGAGGTGAAGAGAGGGAAGACAGAGATGGTGGGAATGAGGTTGGATGTGTGTGGAAAAATAAGTAATGTGGATGAAGAAGGGAAGAGGAAGTTGGTGATGGGGATGCATACACTTGTGGTTGGTTCTTCAAGTGAGCAACAAGCGAGGCACCATGTCAACTTTAGGCTTGCTAAAAGTGAGCCCCATATGATGTAA 2457 0.4705 MAFGWPSTIKNNASASDHLPSKEAMKKNQLILLPIFLSLPLLAISQPTHRYACDRTDPNSSQFPFCNTSLPYQDRASDLVSRLTLQEKAKQLINSATGISRLGVPDYEWWSEALHGVSNSGIGVHFHDPIPAVTIFPAVILSAASFNESLWYTMGQVVSTEGRAMYNVGQAGLTYWSPNVNIFRDPRWGRGQETPGEDPLVVSRYAVNYVRGLQEVGKEGNFAADRLKVSSCCKHYTAYDVDKWKGVDRFHFDAKVTLQDLEDTYQPPFKSCVEEGHVSSVMCSYNRVNGVPTCANPELLKGVIRDQWGLDGYIVSDCDSIMVYHERMNYTETPEDAVALALKAGLNLNCGSYLGDYTKNAVNLGKVKESIVNQALIYNYIVLMRLGFFDGDPTMLPFGKMGPSDVCTVDHQLLALDAAKQGIVLLHNNGALPLSPNTTKTLAVIGPNADATNTMLSNYAGVPCRYTSPLQGLQKYVSAVSYEKGCANVSCSEETLIEGAASIASMADATVVVVGLDLFIEAEDLDRVNLTLPGFQEKLVMEAAKAANGTVILVVMSAGPVDISFVKNVSKIGGILWVGYPGQAGGDAISQVIFGDYNPGGRSPFTWYPQEYVDQVPMTDMNMRPNATSNFPGRTYRFYTGKSLYQFGHGLSYSTFYKFIKSAPTTVLVHLLPQMDMPNIFSSNYPTMPNPNTNGQAIDISAIDCRNLSNIDIVIGVKNAGEIDGTHVVLAFWKPPRSGVRGAPGVELVGFERVEVKRGKTEMVGMRLDVCGKISNVDEEGKRKLVMGMHTLVVGSSSEQQARHHVNFRLAKSEPHMM* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0789 818 PANTHER SUGAR HYDROLASE-RELATED 43 799 IPR044993 GO:0009044|GO:0045493
Vvi3g0789 818 FunFam Probable beta-D-xylosidase 5 694 812 - -
Vvi3g0789 818 Gene3D - 409 655 IPR036881 GO:0004553|GO:0005975
Vvi3g0789 818 Gene3D Immunoglobulins 701 816 IPR013783 -
Vvi3g0789 818 SUPERFAMILY (Trans)glycosidases 63 422 IPR017853 -
Vvi3g0789 818 FunFam probable beta-D-xylosidase 2 408 654 - -
Vvi3g0789 818 Gene3D - 75 395 IPR036962 GO:0004553|GO:0005975
Vvi3g0789 818 SMART Fn3_like_2 727 798 IPR026891 -
Vvi3g0789 818 Pfam Glycosyl hydrolase family 3 N terminal domain 132 375 IPR001764 GO:0004553|GO:0005975
Vvi3g0789 818 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 423 656 IPR036881 GO:0004553|GO:0005975
Vvi3g0789 818 FunFam probable beta-D-xylosidase 7 75 395 - -
Vvi3g0789 818 Pfam Fibronectin type III-like domain 727 798 IPR026891 -
Vvi3g0789 818 Pfam Glycosyl hydrolase family 3 C-terminal domain 423 653 IPR002772 GO:0004553|GO:0005975
Vvi3g0789 818 PRINTS Glycosyl hydrolase family 3 signature 136 155 IPR001764 GO:0004553|GO:0005975
Vvi3g0789 818 PRINTS Glycosyl hydrolase family 3 signature 303 321 IPR001764 GO:0004553|GO:0005975
Vvi3g0789 818 PRINTS Glycosyl hydrolase family 3 signature 229 245 IPR001764 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0789 Vvi-Chr3 7219508 7222460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0789 25 811 Glycoside Hydrolase AT3G19620 64.899 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0789 K15920 - vvi:100249727 1610.89