Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0788 ATGCAATTCCCGGAAATGGGGCTTCTGAGATCAGTGCTGGCACTGTGTCTAGGGTTTGTGGTGGTGTGTCTGGTAGTGGTGCCTCCTGCTGTAGCGAAGTTTGTGGTGGAGAAGAACAGCTTGACGGTGGTATCTCCGGAAAGCATCAAGGGAACGCACGATAGCGCTATTGGGAACTTCGGAATTCCGCAGTATGGGGGGAGTATGGCTGGTACGGTTGTGTATCCCAAGGAAAACACCAAGGGGTGCAAGGGTTTTGATGAGTATGGGATTTCATTCAAGAGCAAGATTGGTGCTCTGCCCACTTTTGTTGTGGTCGATCGTGGAGATTGCTTTTTTGCGTTAAAGGTTTGGAATGCCCAGAATGCAGGTGCTTCTGCAGTGCTTGTTGCAGATAACATTGAGGAACCACTGATAACCATGGACTCCCCTGAAGAGGATGGTTCATCCTCAAAATATATTGAGAACATAACAATACCATCTGCTCTTATTGAGAAAAGTTTTGGTGAAAAACTGAAGAAAGCAATTACTAGTGGGGAGATGGTTAATGTGAACCTTGATTGGAGAGAAGCTGTTCCGCATCCAGATGATCGTGTGGAGTATGAGTTGTGGACAAACAGCAATGATGAGTGTGGAGTTAAATGTGACATGTTGATGGAATTTGTAAAAGATTTCAAGGGTGCTGCACAGATACTTGAGAAAGGAGGTTTCACTCAGTTCACACCCCATTATATAACTTGGTACTGCCCTCAGGCATTCACTGTTAGTAAACAGTGCAAGTCCCAATGCATTAATCATGGAAGATATTGTGCTCCTGATCCTGAACAGGATTTTAGCAAAGGCTATGAAGGGAAAGATGTAGTTCTTGAAAACTTAAGGCAACTATGTGTGTTTAGAGTGGCAAATGAGAGCAAAAGGCCCTGGGTGTGGTGGGACTATGTGACTGATTTTCAAATTAGATGTCCCATGAGGAAGAAAAAATACAACAAGGAATGTGCTGAAACTGTCATCGCATCTCTAGGGCTTGATAGTAAAAAGATTGAAAAGTGTATGGGAGATTCAAATGCCGATTCTGACAATCCTCTTCTGAAAGAAGAGCAAGATGCTCAAGTTGGGAAAGGAACAAGAGGCGATGTCACTATATTGCCCACCCTTGTTGTGAACAATAGACAATATCGAGGAAAGTTGGAGAAAGGTGCTGTTCTGAAGGCCATTTGTTCTGGTTTTGAGGAAACCACTGAGCCAGATGTTTGTTTGAGTGGTGATGTGGAGACAAATGAATGCCTGGATAATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCAAGGATACATTTCGCGGGAGAGTGTGTGAATGCCCCTTGGTTGATGGTGTGAAGTTTAAGGGAGATGGTTACAGTTCCTGTGAAGCTAGTGGGCCTGGGAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGACTCCCAAGATGGACAGAGCTTCTCCGCTTGTTTGGATATTGATGGCGGTAAATGTGAGTGTCCTCCAGGGTTTAAAGGTGATGGTGTTAAGAGTTGTAAAGATGTTGATGAATGCAAAGAAAAGAAAGCCTGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAGTAAGCGGGCAACTGAAGTGAAATCTGCATGGGCTGCAGTCTGGGTAATTTTGATTGGCTTGGCTATGGCTGGTACTGGAGCATATCTTGTGTACAAATATAGAATAAGGTCATACATGGACTCGGAGATCAGAGCTATAATGGCACAATACATGCCCCTGGACAGCCAAACGGAAGTCCCAAATCATGTCTCTGAGGATCATGCATGA 1911 0.4464 MQFPEMGLLRSVLALCLGFVVVCLVVVPPAVAKFVVEKNSLTVVSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENTKGCKGFDEYGISFKSKIGALPTFVVVDRGDCFFALKVWNAQNAGASAVLVADNIEEPLITMDSPEEDGSSSKYIENITIPSALIEKSFGEKLKKAITSGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGFTQFTPHYITWYCPQAFTVSKQCKSQCINHGRYCAPDPEQDFSKGYEGKDVVLENLRQLCVFRVANESKRPWVWWDYVTDFQIRCPMRKKKYNKECAETVIASLGLDSKKIEKCMGDSNADSDNPLLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTEPDVCLSGDVETNECLDNNGGCWQDKTANITACKDTFRGRVCECPLVDGVKFKGDGYSSCEASGPGRCKINNGGCWHDSQDGQSFSACLDIDGGKCECPPGFKGDGVKSCKDVDECKEKKACQCPECSCKNTWGSYECTCSGDLLYIRDHDTCISKRATEVKSAWAAVWVILIGLAMAGTGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQTEVPNHVSEDHA* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0788 636 Gene3D Laminin 418 474 - -
Vvi3g0788 636 FunFam vacuolar-sorting receptor 1 418 474 - -
Vvi3g0788 636 CDD EGF_CA 525 553 - -
Vvi3g0788 636 Pfam PA domain 70 172 IPR003137 -
Vvi3g0788 636 SMART egfca_6 525 567 IPR001881 GO:0005509
Vvi3g0788 636 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 19 625 - -
Vvi3g0788 636 Gene3D Laminin 479 559 - -
Vvi3g0788 636 Pfam Complement Clr-like EGF-like 508 528 IPR026823 -
Vvi3g0788 636 FunFam Vacuolar-sorting receptor 1 31 195 - -
Vvi3g0788 636 CDD PA_VSR 59 186 - -
Vvi3g0788 636 SUPERFAMILY PA domain 40 148 IPR046450 -
Vvi3g0788 636 Gene3D - 31 195 - -
Vvi3g0788 636 ProSitePatterns Calcium-binding EGF-like domain signature. 525 551 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0788 Vvi-Chr3 7196291 7206036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0788 32 636 Miscellaneous Gene Families AT2G14740 83.306 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0788 - - vvi:100265163 1306.97