Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0785 ATGACAGCTGTGAACCCCCCGGTAATCGGCCGGGAGCTCGTGAACCCTCCGGCAGATGGGATCTCCAATCTCCGCTTCTCCAATCATAGCGACAACCTTCTCGTATCCTCCTGGGACAAGAGTGTTCGGTTGTACGATGCGAGTGCAAATGTGTTGCGAGGAGAGTTCATGCACGGAGGCCCTGTCTTGGATTGCTGCTTCCATGACGATTCCTCAGGGTTCAGTGCCAGCGTCGACAATTCCGTGAGGCGGCTTGTTTTCAGCCATGGAAAAGAGGATGTTTTAGGAAGGCATGATGCACCTGTGCGTTGTATTGAGTACTCTTATGCAACAGGGCAAGTGGTAACTGGTAGCTGGGACAAAACACTCAAGTGTTGGGATCCTAGAGGAGCAAGTGGGCAGGAGCGCACTCTTGTTGGGACATACGCACAACCTGAGCGTGTTTATTCTCTATCTCTTTTCAGCAATCGATTAGTAGTTGCAACTGCAGGAAGACATGTAAATATCTATGATTTGCGAAATATGTCTCAACCTGAGCAACGAAGAGAATCTTCATTGAAATATCAAACTAGATGTGTTCGTTGTTACCCCAATGGAACAGGTTATGCTCTTAGTTCTGTTGAAGGTCGGGTTGCAATGGAATTTTTTGAACTCTCTGAGGCCAGTCAAGCCAAAAAATATGCATTCAAGTGTCATCGAAAATCAGAGGCCGGAAGAGACATTGTGTATCCAGTAAATGCAATTGCATTCCACCCCATGTAA 762 0.4724 MTAVNPPVIGRELVNPPADGISNLRFSNHSDNLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASVDNSVRRLVFSHGKEDVLGRHDAPVRCIEYSYATGQVVTGSWDKTLKCWDPRGASGQERTLVGTYAQPERVYSLSLFSNRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFELSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPM* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0785 253 SUPERFAMILY WD40 repeat-like 16 252 IPR036322 GO:0005515
Vvi3g0785 253 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Vvi3g0785 253 PANTHER MRNA EXPORT FACTOR AND BUB3 12 252 - -
Vvi3g0785 253 Gene3D - 10 253 IPR015943 GO:0005515
Vvi3g0785 253 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Vvi3g0785 253 SMART WD40_4 6 46 IPR001680 GO:0005515
Vvi3g0785 253 SMART WD40_4 88 127 IPR001680 GO:0005515
Vvi3g0785 253 SMART WD40_4 135 171 IPR001680 GO:0005515
Vvi3g0785 253 SMART WD40_4 49 86 IPR001680 GO:0005515
Vvi3g0785 253 Pfam WD domain, G-beta repeat 20 46 IPR001680 GO:0005515
Vvi3g0785 253 Pfam WD domain, G-beta repeat 96 127 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0785 Vvi-Chr3 7154984 7160545 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0785 K02180 - vvi:100248006 519.62