Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0784 ATGGCCACCTCTCTACTCTCACCTCTCTCTTCTCCTATCTCGCCCTCGACCGTGGACGCTCACGACGTTGGTTCCGCCGGTGGTGCCGTCAAATCCTCTTTCCTTCACTGCACAAAGCTCTTCTCTGCTCCCAAACTCGGAAGAAGCGCAGTTCGGAGAGGGTTCAGGTCTCCATCTGCAAAGGCCTCGTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTCTATCAGGAGTGAATGACAGGGGTCCTTCAAAATATAGTATGAGTGTAAGCATGTATCGTGGAGGCAGAGGATCTGGAAGACCCAGAACTGCTCCTCCTGATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGATTTTGACAACCCCTCAAAGCCTATATATCTCTACATAAATTCAACTGGAACACAGAATGAGAAGATGGAGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAGCAGCAATGCTTCTATCAGTTGGAGCCAAGGGTTACCGTGGTCTACAGCCAAATGCCTCCACGAAATTATATCTACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAAGGAACTGGGAAGACAAAGGAAGAAATAAAAAAAGATGTCGAACGCCCAAAATATTTGCAAGCACAAGAAGCCATTGACTATGGCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAGCTGGCCCACAAGCAGCTCCCTCTGGATTTAGGTAA 1167 0.4576 MATSLLSPLSSPISPSTVDAHDVGSAGGAVKSSFLHCTKLFSAPKLGRSAVRRGFRSPSAKASFDHIPKQFREGNLQDGLMENYKNVPQYFYGLSPSQMDMFMTEDNPISRQSERVTEESISSARNYMDNGGMWSLSGVNDRGPSKYSMSVSMYRGGRGSGRPRTAPPDLPSLLLDARICYLGMPIVPAVAELLVAQFMWLDFDNPSKPIYLYINSTGTQNEKMETVGSETEAYAIADSMAYCKSDVYTVNCGTAYGQAAMLLSVGAKGYRGLQPNASTKLYLPKVNRSSGATIDMWIKAKELDANSEYYIELLAKGTGKTKEEIKKDVERPKYLQAQEAIDYGLADKIISSMDPAYEKRNYDEMLAQAKSMRRAAGAGPQAAPSGFR* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0784 388 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 88 355 IPR023562 -
Vvi3g0784 388 SUPERFAMILY ClpP/crotonase 164 354 IPR029045 -
Vvi3g0784 388 MobiDBLite consensus disorder prediction 1 22 - -
Vvi3g0784 388 PRINTS Clp protease catalytic subunit P signature 249 266 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0784 388 PRINTS Clp protease catalytic subunit P signature 169 184 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0784 388 PRINTS Clp protease catalytic subunit P signature 209 229 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0784 388 PRINTS Clp protease catalytic subunit P signature 328 347 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0784 388 MobiDBLite consensus disorder prediction 1 18 - -
Vvi3g0784 388 Pfam Clp protease 171 352 IPR023562 -
Vvi3g0784 388 FunFam ATP-dependent Clp protease proteolytic subunit 145 354 - -
Vvi3g0784 388 Gene3D - 148 354 - -
Vvi3g0784 388 CDD S14_ClpP_2 169 349 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0784 Vvi-Chr3 7137471 7143370 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0784 K01358 - vvi:100253136 749.199