Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0776 ATGGCAAACCAAGCGTCCTCATCCTCTACTGCGCTGGAAGTCCTAATCGAAGATGAAGAGTTCTTGTATGGAGCTGAATCGGGTTGGGTCGAGGCTCGTACCTCGTGCGATCACTTGGCTTCTCTGTCGTCCGATCTCGTACACATTCCCACTCCTGAAACTCCCTGCAACAGGTGCCATAACCCATCCGAAAATTGGTTATGTTTGTGCTGTAAGGAAGTTCTTTGCAGCCGTTTTGTAAACAAGCATATGCTTGAGCATTATCAGAAAGTAAACCATTGTTTGGCACTCAGCTACAGTGATTTATCGATTTGGTGTTTCTCATGCGATGCATATTTGGATGCTCAAGCGATTTTGCAACTCCATCCTGTTTATGAAACTGCATATATACTGAAATTTGGCCAGGCCCCTCCATTTCCAACCACAGATAATCAAGCAGAAGCTTCAACTTCAGGCAATTAA 462 0.4481 MANQASSSSTALEVLIEDEEFLYGAESGWVEARTSCDHLASLSSDLVHIPTPETPCNRCHNPSENWLCLCCKEVLCSRFVNKHMLEHYQKVNHCLALSYSDLSIWCFSCDAYLDAQAILQLHPVYETAYILKFGQAPPFPTTDNQAEASTSGN* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0776 153 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 1 150 - -
Vvi3g0776 153 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Vvi3g0776 153 SMART Zf_UBP_1 55 104 IPR001607 GO:0008270
Vvi3g0776 153 ProSiteProfiles Zinc finger UBP-type profile. 34 134 IPR001607 GO:0008270
Vvi3g0776 153 SUPERFAMILY RING/U-box 34 126 - -
Vvi3g0776 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0776 Vvi-Chr3 7056023 7059008 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0776 - - vvi:100246442 326.635