Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0758 ATGGCAGAGAAGCTGAAGCTCTCTCTCCCGGTTCTCCTACCAGGTCCACCTCCCTCAAAACCACTCTTCTCAGACCACCACTTGTCCACAACCCCCTCTCCGCCACCTCCCATTACCCCTCTTCTCCAAAACTTCCAACCGCATACCCAAACCCCAAACCCCCAATCCCCAATAATCCCCAGACGCCGCAGACGTATCGGGAAGTCTCAAGACGCCAACCGTGGAAAGCCATGGTCTCACGGCCGTCTCTCGCCGCCAGGTCAGCGAATTCTGCAAACCCTAATCGACCCCACATTTAATCTTGCTCAAATTGATGAGCTCTTACTTGAATTGTTCGAACAACAGCCGGGAGAATCGGATTTTAGTGTGGAGTCGCTGTCTTTGGATGTTTTGGGTATTGTCAAGGGTTTAGGGTTTTACAAAAAATGTGACACTGCTTTGAGGGTATTCGAGTGGGTTCGGAATCGGAAAGAATCTGAATTATTGTTGAATGGTTCGATTATTGCTGTCATTATAAGTATTCTTGGGAAAGGGGGTCGGGTTTCGGCTGCGGCTTCTTTGCTTCATAATCTTTGTAAAGATGGGTTTGATGTTGATGTTTATGCGTATACTTCTATGATAACTGCATTTACCAGCAATGGGAGGTACAGGGAGGCTGTGATGGTTTTTAAGAAAATGGAGGAAGTGGGATGCAAACCTACTTTGATAACTTACAATGTGATTTTGAATGTGTATGGGAAAATGGGTATGCCCTGGAATAAAATGGTTGGTCTTGTTGATAGAATGAAGAGTGCCGGGATTGCCCCTGATTCATATACTTATAACACGCTTATAAGTTGTTGTAGGCGGGGGAATTTGTATGAAGAAGCAGCAGGGGTTTTGAAGGAGATGAAATTAGCAGGATTTAGTCCTGATAAGGTGACTTATAATGCTTTATTGGATGTTTATGGGAAGTCTAGGCGATCCAAGGAGGCCATGGAGGTCTTGCAGGAGATGGAGGGTAATGGGTGTCCCCCTAGTATCGTGACTTACAATTCATTGATTTCAGCTTATGCCAGAGATGGGTTATTGGAAGACGCCTTGGAGCTCAAAAACCAGATGGTGGAAAAGGGAATTAAACCTGATGTTTTTACTTACACTACTCTTTTGTCAGGATTTGAGAAGGCTGGGAAGGATAAGGCTGCGGTTCAGATTTTTGAGGAGATGAGAAATGAAGGTTGCAAACCCAATATTTGTACATTCAATGCCCTGATTAAGATGCATGGTAACAGGGGAAAGTTTACAGAAATGATGAAAGTTTTTGAAGATATCAAGACATTCCAGTGTTCACCTGATATTGTTACATGGAATACACTTCTTTCTGTGTTTGGGCAGAATGGGATGGACTCTGAAGTTTCAGGAGTGTTTAAGGAAATGAAGAGGGCGGGCTTTGTGCCTGAGAGGGATACTTTCAACACCCTAATCAGCTCCTACAGTCGATGTGGATCATTTGACCAAGCCATGGCTGTTTATAAGAGGATGCTGGAGGCTGGGGTCAATCCTGACCTTTCCAGTTATAATGCTGTTTTAGCAGCATTGGCTCGGGGTGGGCTTTGGAAACAATCTGAGAAAGTACTTGCAGAAATGAAGGATGGTCGATGCAAACCTAATGAGCTGACATATTGTTCTTTGTTACATGCTTATGCCAATGGGAAGGAGATTGAACGAATGTGTGCTCTTGCAGAAGAAATATACTCTGGCATAATTGAACCTCGTGCAGTGCTCTTGAAGACCCTTGTTCTAGTAAATAGCAAGTGTGACCTTCTAATGGAAACAGAACGAGCTTTCTTGGAGTTGAGACAGCGAGGGTTTTCACCTGACATAACTACTCTTAATGCCATGGTTTCCATCTATGGCAGGAGGCAGATGGTTGCAAAAGCAAATGAAATTTTGGATTGCATGAAAAGGGGTGGGTTCACTCCAAGCTTGACAACTTACAACAGCTTGATGTACATGTACAGCCGGTCTGCAAATTTTGAAAGATCAGAAGAAATCCTGAGGGAAATTCTGGCAAAAGGAATAAGGCCTGATATCATTTCATACAATACTGTTATTTATGCCTATTGTAGAAATGGTCGGATGAGAGATGCTTCACGGGTACTCTCAGAAATGAGGGAGTCTGGGCCTGCTCCAGATATAATTACTTATAATACCTTTATTGCAAGTTATGCAGCTGATTCCATGTTTGTGGAGGCTATTGACGTTGTCTGTTACATGATCAAGCATGGCTGTAAACCAAACCAAAGCACATACAATTCCATTGTAGATTGGTACTGCAAGCTTAATCGCAGAGATGAGGCAAGCATGTTTGTCAACAACCTTCGCAAGCTTGATCCACATATTTCCATGGATGAAGAATGTAGGTTATCAGAACGAATGGCAAAGAAATGGTCATAG 2436 0.4343 MAEKLKLSLPVLLPGPPPSKPLFSDHHLSTTPSPPPPITPLLQNFQPHTQTPNPQSPIIPRRRRRIGKSQDANRGKPWSHGRLSPPGQRILQTLIDPTFNLAQIDELLLELFEQQPGESDFSVESLSLDVLGIVKGLGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNLRKLDPHISMDEECRLSERMAKKWS* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 269 IPR002885 -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Vvi3g0758 811 Gene3D Tetratricopeptide repeat domain 722 791 IPR011990 GO:0005515
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Vvi3g0758 811 PANTHER OS03G0856100 PROTEIN 121 479 - -
Vvi3g0758 811 Pfam Pentatricopeptide repeat domain 678 736 IPR002885 -
Vvi3g0758 811 Pfam Pentatricopeptide repeat domain 293 351 IPR002885 -
Vvi3g0758 811 Pfam Pentatricopeptide repeat domain 186 248 IPR002885 -
Vvi3g0758 811 Pfam Pentatricopeptide repeat domain 433 491 IPR002885 -
Vvi3g0758 811 Pfam Pentatricopeptide repeat domain 611 666 IPR002885 -
Vvi3g0758 811 Pfam Pentatricopeptide repeat domain 363 424 IPR002885 -
Vvi3g0758 811 Gene3D Tetratricopeptide repeat domain 118 253 IPR011990 GO:0005515
Vvi3g0758 811 Gene3D Tetratricopeptide repeat domain 482 577 IPR011990 GO:0005515
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Vvi3g0758 811 MobiDBLite consensus disorder prediction 43 57 - -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 655 689 IPR002885 -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 690 724 IPR002885 -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 658 691 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 342 376 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 412 446 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 307 340 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 236 271 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 201 234 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 483 515 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 377 411 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 727 760 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 692 725 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 447 479 IPR002885 -
Vvi3g0758 811 NCBIfam pentatricopeptide repeat 518 551 IPR002885 -
Vvi3g0758 811 Gene3D Tetratricopeptide repeat domain 595 721 IPR011990 GO:0005515
Vvi3g0758 811 Gene3D Tetratricopeptide repeat domain 254 392 IPR011990 GO:0005515
Vvi3g0758 811 Gene3D Tetratricopeptide repeat domain 393 481 IPR011990 GO:0005515
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Vvi3g0758 811 Pfam PPR repeat 755 785 IPR002885 -
Vvi3g0758 811 SUPERFAMILY TPR-like 316 512 IPR011990 GO:0005515
Vvi3g0758 811 Pfam PPR repeat family 514 563 IPR002885 -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 725 759 IPR002885 -
Vvi3g0758 811 MobiDBLite consensus disorder prediction 1 85 - -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Vvi3g0758 811 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Vvi3g0758 811 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 250 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0758 Vvi-Chr3 6804577 6807012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0758 115 801 Glycosyltransferase AT1G05670 24.051 1.07e-63 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0758 - - vvi:100257649 1575.45