Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0757 ATGGCGATGTCTTTGGGGGTTATCTCTACCTTCTTCTCCGGCGAAACGGCGTCGTTTTCTAAGTCTGCGTTGTCCTTGACATCACTCCGGCACCTTCCGCCTCCTTCTCCTCATACTAACCTGCGCCTGGTGCGAACCGTAACCTCGGCTGCCGCGTCGAAGCCGCCGGCTGCGGCCACCGGCAAGCGGGAGCCTCGAGGCATCATGAAGCCCCGCCGGATTTCGCCGGAAATGCAAGACTTTCTCGGCGTCCCCGAGATTCCTCGGACCCAAGCGCTGAAGCAGATTTGGGCTTATATCAAGCAACACAATCTTCAGGATCCTGAAAACAAGAAGATTATAGTCTGTGATGAGAAACTGAAGAGTATATTTGCAGGGAAGGACCGCGTTGGTTTTCTTGAGATTGCAGGGTTGATTAATCCACACTTTCTTAAGTGA 438 0.532 MAMSLGVISTFFSGETASFSKSALSLTSLRHLPPPSPHTNLRLVRTVTSAAASKPPAAATGKREPRGIMKPRRISPEMQDFLGVPEIPRTQALKQIWAYIKQHNLQDPENKKIIVCDEKLKSIFAGKDRVGFLEIAGLINPHFLK* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0757 145 MobiDBLite consensus disorder prediction 49 75 - -
Vvi3g0757 145 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 52 144 - -
Vvi3g0757 145 CDD SWIB-MDM2_like 72 143 - -
Vvi3g0757 145 ProSiteProfiles SWIB/MDM2 domain profile. 67 145 IPR003121 -
Vvi3g0757 145 Gene3D SWIB/MDM2 domain 62 145 IPR036885 -
Vvi3g0757 145 SMART swib_2 68 145 IPR019835 -
Vvi3g0757 145 Pfam SWIB/MDM2 domain 70 143 IPR003121 -
Vvi3g0757 145 SUPERFAMILY SWIB/MDM2 domain 63 145 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0757 Vvi-Chr3 6798260 6801869 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vvi3g0757 SWIB 3.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0757 - - vvi:100242279 286.96