Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0754 ATGGCTGTGGATATTCCAACCTTGGAGGAAAGGTATGTTGATTCTTGTAGGCAGCATGGAGCACCACCTAATACTGAAGTTTTATCCGCTCTTCTTAAGGCCAAGGTGAAAAGAAACAATCATGAACCATGTAGCATGGTGGTTTTCTTGGACAGAGTAAAGGATATTGATTTCTATCCTCTTCTTGACTTGTTAATGGAAATCGATGCTTCAGAGATTGATGCAGTTGACATATTTAATGAATCATCATGTGTGTTGAATGGAGAATATGCTTTGTCATTGATGCGTGCAATCAATCAAAAGCTTCGAATTGTTGATCTCCAAGATCTTTCACTTGGGAAGGACTTCTTGCGGGATCTTTCTCAGAGAGGCTTGACTTGCCAAGCATTAAACTTGAGGTCTTCCCATTTCCGGAAGCTCAACTTGATTGGGAAGTTCATGCAGATGCACACTCTTAACTTGGATTTCAGTACTTCCCTCACTAGTTTCCGGGAGGATTGTTTTACTTGCATGCCAAACCTAAGGTGTCTCTCGATGTGTGAAACAAGAGTGTCCAATCTTTGGACAACTATTGCAGCACTCTCTAAACTCCCTTCTTTGGCCGAACTTCGGTTTCAGAATTGTTTATGTTGCTATGACACAGGACCTTGTCCCGTGTCATCTGGTGGGAAGGCAAATGACAGAACTTATTCAGTTCAGCCACAAAGGGGTCCTCTAATTGAAGCTCCATCAGTTGATGGCTGGATACTTGGTAATCAAAATTCAACCGCACAAGAGGCCTTTCAGGAATTTTTTTTGCATAATAATGTCATTATGAATCCTGAATTCCAAAATACAACCGAGGACTCATCAGATGATAGTGAAGTCGACTTTTCAACTCACCAGCAAGAATTTGGTTTGGTGGAACTTTTGTCTAATGCAGTTGATCTGCAGAGTGAGGTTCCTTTTTGTACATCATGGACTCAAAGTGAAGAAGTGTCCTTGAAAGATGCTTTTAGTTCACAAAGCATCCCTTTTCTTCAAGATATTATGTTGAAGTATGTTTCTCATCATCCATCACCAATATGCTTTGAGAAACACTACAGGGAATACATGATAGCTTCATTACCACATCTGAATGTTTTAGATAACTTACTCATCAAAGAGATTGAAAGGGATTTTGCCAGTGCTATTTTTGCGCAATATTTTGAGTATCTACCTTACAGAAGGAATCGAAAAGAGAATGTTGTTGATATCTTGCAGATGCGTGAAATAAAAGCAATCCATAATCGTATACAAACTCCTAAGAAAAAGCCATCATGTCCTCCTGGAAGGTCTCAATATTTTTATTCCAGGTCACTAGGGGCTGCCAAAGTAGGGTCTTCACCATGGCCATTGTTGCATCCGCTTTCCATTTTAGGCAATGATTCAGGAGGTGAAAGAAGTTTTCGTCCAAGGCAGTTTGAGTACCATCCTTCTAACTCTAGCCTAATGGTCTTTGGAACCCTAGATGGTGATGTTGTTGTTGTCAACCATGAGAGTGAAAAGATTGTTAGTTATATTCCATCACTAGGAGCAATGAATAGTGTACTGGGACTTTGTTGGCTCAAGAAGCATCCATCGAAGCTCATTGCTGGTTCTGATAACGGTTCACTGAAATTGTATGATATCCAGCATATGTCGTCAACAGTTGCAGACATTTACTGCAGTGCTGGTTCTGCCACCTTTGATGAATTTGATCAATTGACATCTGTTCATGTCAACTCAACAGATGAACTCTTTCTTGCAAGTGGGTACTCCAAAAATGTTGCTTTGTATGACATCAATAGTGGAAGACGGTTGCAGATGTTCACTGATATGCATCAAGAGCATATTAATGTTGTTAAGTTTGCAAATCATTCCCCATTCCTTTTTGTTACTTCATCATTTGATCAAGATGTCAAAATGTGGGATTTGAGACAGAAACCAATGCAGCCTTGCTATACTGCTTCAAGTTCAAGAGGAAATGTAATGGCTTGCTTTTCTCCAGATGACCACTATCTTCTTGTGTCAGCTGTTGACAATGAGGTTAAACAACTTTTGTCTGTTGATGGAAGACTCCATTTGAATTTTGAGATAGCTTCAACAGGTAGCTCTCAAAATTACACCCGTTCTTATTACATGAATGGAAGGGACTATATCATCAGTGGCAGTTGTGATGAACAAGTGGTCCGAATTTGCTGTACTCAAACTGGAAGGCGTCTCAGGGATGTTTCTTTGGAGGTAAATGAATCAAATTATTTTCTCTCATTTTTCATCTCCAACTCTATGATAACATGTTTGGTAAAACAGCTCATAGCTGGACACTGA 2328 0.3978 MAVDIPTLEERYVDSCRQHGAPPNTEVLSALLKAKVKRNNHEPCSMVVFLDRVKDIDFYPLLDLLMEIDASEIDAVDIFNESSCVLNGEYALSLMRAINQKLRIVDLQDLSLGKDFLRDLSQRGLTCQALNLRSSHFRKLNLIGKFMQMHTLNLDFSTSLTSFREDCFTCMPNLRCLSMCETRVSNLWTTIAALSKLPSLAELRFQNCLCCYDTGPCPVSSGGKANDRTYSVQPQRGPLIEAPSVDGWILGNQNSTAQEAFQEFFLHNNVIMNPEFQNTTEDSSDDSEVDFSTHQQEFGLVELLSNAVDLQSEVPFCTSWTQSEEVSLKDAFSSQSIPFLQDIMLKYVSHHPSPICFEKHYREYMIASLPHLNVLDNLLIKEIERDFASAIFAQYFEYLPYRRNRKENVVDILQMREIKAIHNRIQTPKKKPSCPPGRSQYFYSRSLGAAKVGSSPWPLLHPLSILGNDSGGERSFRPRQFEYHPSNSSLMVFGTLDGDVVVVNHESEKIVSYIPSLGAMNSVLGLCWLKKHPSKLIAGSDNGSLKLYDIQHMSSTVADIYCSAGSATFDEFDQLTSVHVNSTDELFLASGYSKNVALYDINSGRRLQMFTDMHQEHINVVKFANHSPFLFVTSSFDQDVKMWDLRQKPMQPCYTASSSRGNVMACFSPDDHYLLVSAVDNEVKQLLSVDGRLHLNFEIASTGSSQNYTRSYYMNGRDYIISGSCDEQVVRICCTQTGRRLRDVSLEVNESNYFLSFFISNSMITCLVKQLIAGH* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0754 775 PANTHER BNAC09G30780D PROTEIN 2 753 IPR046377 GO:0071493|GO:0080008
Vvi3g0754 775 SMART LRRcap_2 358 376 IPR003603 -
Vvi3g0754 775 Gene3D Ribonuclease Inhibitor 91 222 IPR032675 -
Vvi3g0754 775 Gene3D - 473 756 IPR015943 GO:0005515
Vvi3g0754 775 SMART WD40_4 507 549 IPR001680 GO:0005515
Vvi3g0754 775 SMART WD40_4 649 687 IPR001680 GO:0005515
Vvi3g0754 775 SMART WD40_4 603 644 IPR001680 GO:0005515
Vvi3g0754 775 SMART WD40_4 562 600 IPR001680 GO:0005515
Vvi3g0754 775 SUPERFAMILY L domain-like 99 347 - -
Vvi3g0754 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 611 646 IPR001680 GO:0005515
Vvi3g0754 775 SUPERFAMILY WD40 repeat-like 477 744 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0754 Vvi-Chr3 6743758 6752380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0754 530 735 Miscellaneous Gene Families AT5G08390 22.768 7.25e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0754 - - vvi:100267918 1505.35