Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0751 ATGCTCACTAAATTTTCGCATTGTCCACCCTTCATATTCAAAAATGGCTTTCATTTCCACTTCTCAGTCAGCTTAATGCATTCTTTCTTTTCGAATTCAAATTCTCATAATTTCACCAATTTCTCTGTAATGCTACAAGGCCATATTTCACATTCGCATCTTCTTCAAATTCATGCTCAAATCTTTCGAGTGTTAGCACATCAGGACAATCTCGTGGCAACTCGTCTCATCGGCCACTACCCATCTCGTTTGGCTCTTCGAGTCTTTGATCAGCTTCTAACTCCCAATATATTCCCCTTTAATGCCATTATCAGAGTTTTGGGTGAAGAGAGTCTTTGCTCGTGTGCGTTCTTCGTGTTCAAAGCCTTATTGCAGCGCTCGCTTTCGCCTAACGACTTCACTTTTTCTTTCCTTCTGAAGGCTTGCTTTCGATCAAATGATGCCAAGTATGTCAAACAAGCCCATACCCATGTTGTTAAATTGGGTTTTGTTTCTGATTCCTTTATTTGTAATGGTCTTCTTGTTGCGTATGCGATGGGCTTTAAGGATATGATATCGGGGCGTAAGGTGTTTGATGAAATGCCTGACAGGGCTATGGTTCGTTGTTGGACTTCTTTGATTGCTGGGAGTGCTCAATCAGGTCAGACTGAAGAGGTTTTGCGCCTTTTCTTTATGATGGTTAAGGAGAATTTGAGGCCGGAAAATGATACCATAGTCAGTGTTTTATCTGCATGTTCAAAACTTGAGGCTGTAGAAATTGAGAAGTGGGTAATGATTTTATCAGAATTCATCAATGATGATGACACGGGGAGTTTTGGTCGAGATTCAGTCAACACTGTTCTTGCTTATTTGTACGGGAAGTGGGGAAAGGTTGAAAAGTGTAAGGAAAGATTTGATGAAATTGTTGGGATTGGCAAAAGAAGTGTGCTTCCTTGGAATGTGATTATAAGCGCATATGTCCAAAATGGTTGTTCCTTTGAGGCTCTGAGTCTTTTCCGGGTGATGATTGAGGATCTCAATCTTAGGCCCAACCATGTTACAATGGTGAGTGTGCTTTCTGCTTGCGCTCAAGTTGGCGATTTAGATCTTGGTAAATGGATTCATGGATATGTGAAATCTGAAGGTTGCAAGGCTATTGTAGAGTCAAACACATTTCTAGCCACTGCATTAATAGACATGTATTCTAAATGTGGGAATTTGGGGAAGGCAAAAGATGTTTTCGAGCAGATGGTCTCCAAGGATGTTGTTTCATTCAATGCTATGATCATGGGTCTTGCAATAAATGGTGAAGGAGAGGAGGCATTGAGGCTTTTCTCCAAAATGCAAGAGCTCAGTTTGCGTCCAAATTCTGGAACCTTCCTTGGTGTTTTATGTGCATGCAGTCACTCAGGGTTGTTAGACACAGGGCGGCAGATGTTTCTAGACATGATCCCGCACTTTTCTGTTCCTCCTGAACTAGAACATTATGCTTGCTATGTTGATCTCCTCGCACGAGTGGGCCTTCTTGAAGAAGCCTTTGAGGTTGTGGCCTCCATGCCCTTTGTGCCTAACAATTTTGTATGGGGGGCTTTGCTTCAGGGTTGCAGGCTCCATTCTAGATTGGAGTTAGCCCAAGATGTTTCCCAAAAGCTTGTTAAAGTAGATCCGGAAAATTCTGCAGGCTATGTGATGTTTTCCAATGCCCTTGCTAGTGATCAACAATGGGGGGAAGTCTCAGGCTTGAGGTGGTTAATGAGGGAAAAGGGGGTGAGGAAGCACCCAGGGTGTAGTTGGATCAGCGTCAACAGAGTTGTGCATGAATTCCTTGCAGGATCCCTATCACATCCTCAAATTGATAGCATATATCATACATTAAATGGATTGGTGAAGGAAATGAAGGTAGCAAGTGCTTAG 1893 0.4253 MLTKFSHCPPFIFKNGFHFHFSVSLMHSFFSNSNSHNFTNFSVMLQGHISHSHLLQIHAQIFRVLAHQDNLVATRLIGHYPSRLALRVFDQLLTPNIFPFNAIIRVLGEESLCSCAFFVFKALLQRSLSPNDFTFSFLLKACFRSNDAKYVKQAHTHVVKLGFVSDSFICNGLLVAYAMGFKDMISGRKVFDEMPDRAMVRCWTSLIAGSAQSGQTEEVLRLFFMMVKENLRPENDTIVSVLSACSKLEAVEIEKWVMILSEFINDDDTGSFGRDSVNTVLAYLYGKWGKVEKCKERFDEIVGIGKRSVLPWNVIISAYVQNGCSFEALSLFRVMIEDLNLRPNHVTMVSVLSACAQVGDLDLGKWIHGYVKSEGCKAIVESNTFLATALIDMYSKCGNLGKAKDVFEQMVSKDVVSFNAMIMGLAINGEGEEALRLFSKMQELSLRPNSGTFLGVLCACSHSGLLDTGRQMFLDMIPHFSVPPELEHYACYVDLLARVGLLEEAFEVVASMPFVPNNFVWGALLQGCRLHSRLELAQDVSQKLVKVDPENSAGYVMFSNALASDQQWGEVSGLRWLMREKGVRKHPGCSWISVNRVVHEFLAGSLSHPQIDSIYHTLNGLVKEMKVASA* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0751 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Vvi3g0751 630 Gene3D Tetratricopeptide repeat domain 274 381 IPR011990 GO:0005515
Vvi3g0751 630 FunFam Pentatricopeptide repeat-containing protein At1g28690, mitochondrial 122 256 - -
Vvi3g0751 630 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 387 616 - -
Vvi3g0751 630 Pfam PPR repeat 202 230 IPR002885 -
Vvi3g0751 630 Pfam PPR repeat 312 337 IPR002885 -
Vvi3g0751 630 SUPERFAMILY TPR-like 368 558 IPR011990 GO:0005515
Vvi3g0751 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 413 IPR002885 -
Vvi3g0751 630 Pfam PPR repeat family 413 460 IPR002885 -
Vvi3g0751 630 Gene3D Tetratricopeptide repeat domain 388 606 IPR011990 GO:0005515
Vvi3g0751 630 Gene3D Tetratricopeptide repeat domain 22 182 IPR011990 GO:0005515
Vvi3g0751 630 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 46 626 IPR046960 GO:0003723|GO:0009451
Vvi3g0751 630 NCBIfam pentatricopeptide repeat 312 344 IPR002885 -
Vvi3g0751 630 NCBIfam pentatricopeptide repeat 202 233 IPR002885 -
Vvi3g0751 630 NCBIfam pentatricopeptide repeat 388 416 IPR002885 -
Vvi3g0751 630 NCBIfam pentatricopeptide repeat 416 449 IPR002885 -
Vvi3g0751 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Vvi3g0751 630 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 274 377 - -
Vvi3g0751 630 Pfam E motif 531 592 IPR046848 -
Vvi3g0751 630 Gene3D Tetratricopeptide repeat domain 183 267 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0751 Vvi-Chr3 6691119 6693011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0751 85 626 Glycoside Hydrolase AT3G49170 31.136 3.16e-78 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0751 - - vvi:100250734 1262.28