Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0748 ATGGAGGAGAGCAACGGCGAAGTTGAAGTAGAGCGGAAGGAGAAGACGAAGCACAAGGGAAAGCACGACAAGCCAAAGCCATGGGATGACCCTTCCATCGATCACTGGAAAGTCGACAAGTTCGACCCTTCTTGGAACGAGGGCGGCATGCTCGAAGTCAGCTCCTTCTCCACCCTCTTCCCTCAATACAGAGAAAAATACTTACAAGAAGCTTGGCCCACTGTGAGGGGTGCATTGAAGGAATTTGGTGTTAAATCTGAGCTAAACCTGGTTGAGGGATGTATGACAGTGTCAACAACTAGAAAGACTAGGGACCCCTATATCATTATGAAGGCTAGGGATCTCATTAAACTTTTGTCAAGAAGTGTTCCTGCACCTCAGGCAATCAAGATACTGAATGATGAAATGCAATGCGATATCATCAAGATTGGAAGCCTTGTTCGGAATAAGGAACGATTTGTTAAGCGTAGGCAACATCTTGTGGGCCCCAACTCTTCCACTCTAAAGGCACTTGAAATTTTGACAGGATGCTATATTCTTGTTCAGGGGAACACTGTTGCTGCTATGGGTTCATTTAAAGGTCTAAAACAAGTCCGAAGGGTGGTGGAAGACTGTATACAGAATAAAATGCATCCAGTATATCATATCAAGACCTTGATGATGAAGAGAGAACTTGCTAGTGATCCAGCACTTGAAAATGAGAACTGGGATAGGTTTCTTCCAAAGTTTAAGAAGAAAAATGTTAAACAAAAGAAAGTTAAGAGCAAGGAGAAGAAGCCATATACACCCTTCCCTCCTCCTCAGCCACCTAGCAAGGTTGACCTACAACTGGAAAGTGGTGAGTACTTCTTAAGTGATCAAAAGAAGTTTGCGAAGAAGTGGCAACAGAAGCTGGAGAAGCAGGCAGAAAAAACAGCAGAGAACAAAAGAAAAAGAGAAGCTGCATTTGTTCCTCCCATGGAACCCATGGTGCAGGATCCAAGCAAATCTGCTGATGACAAGAATGATGTGGCTGCAATGGCCATGTCGTTAAAGAAAAAGGCAAAGGAGTTTGGGAAGCAAAAATCCCTTGAGAATGTCAATCCTGAAACATACATTGCGGCTTCAGGAGAAGCACCCTCGAAGAAGAAACGCAAGCACTCTAAGTCTTTGATACAATGA 1161 0.4384 MEESNGEVEVERKEKTKHKGKHDKPKPWDDPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQAIKILNDEMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAENKRKREAAFVPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAASGEAPSKKKRKHSKSLIQ* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0748 386 CDD KH-I_KRR1_rpt2 136 229 - -
Vvi3g0748 386 MobiDBLite consensus disorder prediction 301 336 - -
Vvi3g0748 386 CDD KH-I_KRR1_rpt1 50 132 - -
Vvi3g0748 386 MobiDBLite consensus disorder prediction 301 316 - -
Vvi3g0748 386 Gene3D K Homology domain, type 1 48 134 IPR036612 GO:0003723
Vvi3g0748 386 MobiDBLite consensus disorder prediction 1 32 - -
Vvi3g0748 386 Pfam Krr1 KH1 domain 54 134 IPR041174 -
Vvi3g0748 386 Coils Coil 295 315 - -
Vvi3g0748 386 PANTHER HIV-1 REV BINDING PROTEIN 2, 3 7 356 IPR024166 -
Vvi3g0748 386 Gene3D K Homology domain, type 1 135 238 IPR036612 GO:0003723
Vvi3g0748 386 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 135 234 IPR036612 GO:0003723
Vvi3g0748 386 MobiDBLite consensus disorder prediction 247 272 - -
Vvi3g0748 386 MobiDBLite consensus disorder prediction 348 386 - -
Vvi3g0748 386 FunFam KRR1 small subunit processome component 48 134 - -
Vvi3g0748 386 MobiDBLite consensus disorder prediction 1 16 - -
Vvi3g0748 386 PIRSF KRR1 2 364 IPR024166 -
Vvi3g0748 386 FunFam KRR1 small subunit processome component 135 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0748 Vvi-Chr3 6642410 6651021 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0748 K06961 - vvi:100245609 709.138