Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0747 ATGGCGGTTGATCCGATTCTCTCGTCTCCTCTCGGCCCAGCGGCATCCGAGAAGGATGCAAAAGCGCTTCAGTTCATTGAAGAAATGACCCGTAATGCCGATTCAGTTCAGGAGAGGGTGTTGGCTGAAATTTTGAGCCGAAACGGAGAAACTGAGTATCTGAAACGGTTCAAACTGGAAGGGTCAACGGTCCGTGAGACGTTTAAGTCTAAAATCCCGGTGATTAAGTATGAGGATCTGCAGCCTGAAATCCAGCGTATTGCCAATGGAGATCGCTCTGCGATCTTGTCGGCTCACCCCATTTCTGAATTCCTCACCAGCTCTGGGACATCAGCTGGTGAGAGGAAACTCATGCCCACTATTCAAGAAGAGTTGGATCGTCGTCAGATGCTCTACAGCCTTCTCATGCCTGTAATGAACTTATATGTGCCTGGGTTGGACAAAGGAAAGGGTCTCTACTTTCTGTTTGTGAAGTCCGAAACGAGGACCCCTGGTGGGTTACTGGCTCGCCCAGTGCTCACAAGCTACTACAAAAGCGAACACTTCAAGACTCGCCCTTATGACCCCTACAACGTCTACACCAGTCCCAACGAAGCAATCCTCTGCGCTGACTCTTTCCAGAGCATGTACACCCAGATGCTCTGCGGCATCTACGAGCGCAAACAAGTCCTCCGGCTCGGAGCCGTCTTTGCCTCCGGCCTACTCAGAGCCATACGATTCCTCCAACTCAACTGGCACCAACTCACACATGACATCCGAACCGGAACTCTCAGCCCCAAAATCACTGACCCTTCGGTTAGAAATTGTGTAGCAGGTGTCCTGAAACCAGACCCAGAACTCGCCGACCTCGTCGCCGGCGAGTGCTCCAAGGACAACTGGGAGGGGATTATCACTCGAATTTGGCCTAACACAAAGTACCTCGATGTCATCGTCACCGGTGCAATGGCTCAGTACATTCCAACTCTGGACTACTACAGCGGTGGATTGCCACTTGCATGTACAATGTATGCGTCGTCGGAGTGCTATTTCGGACTCAATCTCAACCCCATGTCCAAACCCTCTGAAGTCTCCTACACCATAATGCCCAACATGGCTTACTTCGAGTTCCTTCCTCATGAGCACTCCTCCATCCCCTTGAGCCGCGATTCGCCTCCAAGACTCGTGGACCTGGCCCACGTCGAAGTGGGAAAAGAGTACGAACTCGTCATCACAACCTACGCCGGACTCTACCGCTACCGAGTCGGAGACATCCTCCGAGTCACCGGGTTCCACAACTCAGCCCCGCAGTTCCACTTCGTTCGCCGCAAGAACGTCCTCCTCAGCATCGACTCCGACAAGACCGACGAGGCCGAGTTGCAGAAGGCCGTCGACAACGCGTCGAAGCTCCTTCGAGAAGTCAACACCAGCGTCGTGGAGTACACCAGCTTCGCCGATACCAAAACGATTCCGGGTCACTATGTGATTTACTGGGAACTACTGGTGAAAGACTCGGCGAACTCGCCGAGCGACGAGCTACTGGGTCAGTGCTGTTTAGCGATGGAAGAATCGCTGAACTCAGTGTACCGACAAGGGCGAGTCGCAGACAACTCGATTGGGCCACTAGAGATACGCGTGGTGAAAAGTGGAACGTTCGAAGAACTGATGGATTACGCCATCTCCAGAGGAGCCTCCATTAACCAGTATAAGGTGCCGAGGTGCGTTAACTTTACACCAATCATGGAGCTCCTCGACTCCAGAGTGGTCTCGTCGCACTTTAGCCCTGCTCTACCTCATTGGACTCCGGCACGCCGGCGGTGA 1797 0.5326 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0747 598 Pfam GH3 auxin-responsive promoter 26 569 IPR004993 -
Vvi3g0747 598 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 20 589 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0747 Vvi-Chr3 6633819 6635797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0747 16 586 EF-hand Containing Proteins AT1G23160 49.050 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0747 K14487 - vvi:100250741 1198.73