Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0736 ATGATGAGGCATGGAGGACATTTTGAAAATTATTTTTCGAGGCATCGAGTTACTCATATCATCTGCAGTAATCTGCCTGACAGTAAAATTAAGAATCTGAGGTCATTCAGTGGTGGACTTCCAGTTGTGAAGCCTACATGGGTACTGGATTCTGTTGCTGCTAATAAGCTATTGAGTTGGATTCCTTACCAACTTGACCAGCTTGCTAATGAAACTCGTAACCAGCCAAAGTTGTCTGCCTTCTTTGCTCTAAAAAGCATCCCAGTCTTTGAAGATGCTGTAACTCATACTACTTATCCATTAGTACCTGAAACTGAGGACTCAGTGTTTAAAGGTGGCACATCCAAGGATGCTGTTTCATCTGAAGGGGGTCAATATTTAGAATACACAAGGCAATCAAGTGGAGAAATTGATGATCACCAATGTGAGAACACCAATGAAACAATAATTGAGAAGCCATTTTCCAATGATGAAAAATCTTCTGAAATTAAAATGGAAGAACAGAGTTTTTCTAATCAAGAAGAAGAGTGTAGCATAAAAAATGAACTTCAGTCTAGTCCACATCGACCTTCTGCTTCAGTTAGTAGCTACTACTTGGACAATGCAAGAAAAGAATCATCAAGTACAACAGTTGTTGGGTGTTCTAACAAGGGTCATTCAACTCTTGAAGATCCTAATTTTGTCGAAAATTATTTCAAGTACTCAAGGCTGCACTTTATAGGAACCTGGAGAAACCGATATCAGAAGCGTTTCCCCAGATTGTCTAATGAGTTCAAGCATACAAGTTCAGACCTTAATGCTTCTGGTGTTTCCCAGAAGAATGTTATCATCCATATGGACATGGATTGCTTTTTTGTCTCAGTGGTGATCAGGAACAATCCAGAATTACAGGATAAGCCTGTAGCTGTGTGCCATTCAAACAATCCAAAAGGAACTGCTGAAATTTCATCTGCAAACTACCCTGCTCGAGATTATGGAGTAAAGGCTGGTATATTTGTTAGAGATGCTAAAGCTCTTTGTCCTCACCTTGTCATTTTTCCTTACAACTTTGAAGCTTATGAGGAGGTAGCTGATCAGTTTTATAACATATTGCACAAGCACTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCCTTTTTAGAAGTTATGGACTCAAAAGAGGGGGATCCTGAGCTTCTAGCTTCAATCATAAGAAAAGAGATTTTTGAGACCACAGGATGCACTGCAAGTGCTGGGATAGCCGGGAATTTGCTTATGGCTCGCCTGGCCACGAGAAGTGCCAAACCAAATGGTCAGTGTTACATCCCTGTTGATAAGGTGGATGATTATTTACATCAACTTCCAATCAAGGCACTTCCAGGAATTGGGCATGTTTTGGAGGAAAAGTTGAGAAGGAGAAAAGTTCACACCTGTGGCCAGTTGCGTATGATTTCCAAGGAATCTCTTCAAAGGGACTTTGGTACGAAAACTGGTGATATGCTGTGGAATTATTGTAGAGGAGTGGATAACCGGGTGGTTGGAGTGATTCAGGAAAGCAAGTCCATTGGTGCTGAAGTAAATTGGGGTGTGAGGTTCAATGATTTGAAAGATAGTCGCCATTTTCTTGTGAATCTTTGCAAGGAAGTGACATTACGCTTAAAGGGATGTGGAGTGCAAGGGCGTACTTTTACACTGAAGATGAAGAAGAGAAGAAAAGATGCTGGGGAGCCTGCAAAGTATATGGGTTGTGGAGATTGTGAAAATCTTAGCCACTCTATGACGGTCCCACTTGCTACTGATGATGTGGACGTGATTCAAAGGATAGCCACACAGCTCTTTGGGTTTTTCCACATAGATGTCAAGGATATCCGGGGTATTGGCTTGCAGGTTTCGAGGCTTGAAAATGCAGATACTGCTAAGCAAGGGCATCAAAGAATCTCCATAAGATCTTGGCTCACCTCTGCCCCTGCAACCAATGAAGAACTATGTAAAACCAGTTGTCTAGTAAGAAAGGAGAGGGCTGTTGCAGATGGTGAGAAACAGAGCACTGATATAAGTTTGGGTCAATTGTCGAATGATTCCAAGAGGCCTTCTTTGCAAATGAGCCCTAGTTCTTCCAACAATGAAGCTCCTTTAAACCAGGTTTCTGAACTGCCAGCATTGTGCGATCTTGATATGGGAGTTTTAGAGAGTCTTCCTCCAGAACTCCTTTCAGAAATAAATGATATGTATGCGGGGAAGTTGTCTGATTTCATCAGGAAAAGGAAAGGAAAAAATGAAAATGTTAGTGGTACTATGTGCACCACATCATATGAAATTTATGAAGGTGCCATAAATAATGGAAAGCAACTTCATTGCTCTATTGTTCCCATAAGAAAGACCCCAGTAGAAAATAAGGTGGAGAAAACTCTGGACAGAGAAATTGCGACTGAGAATTCATTGTTACAATCATCTGAAGTAGAGAAGGTTAAGCAGTATAAAATTGATGAAATTCAGGAAGTGTCTGTTTCTGGGGCAGTATCCTTAAATGTTGTTGATCCCGCTTCAGCGCTTGAAAAAAGTGATCTAATGCCTTCATCTCTAAGTCAAGTAGATATCTCAGTGTTACAACAGTTGCCCAAGGAAATGTGGGTCGACATACTTGAGCAGCTTCCTGTTCACAGGAAGCCAGAACATTCCTCAAGTGCTGCCTTGGATCCTCTTATTGCCAATGCTCAGGAATCATTATGTTTCAAGCATACTGAGAATAATTCTAAATCAGTGGATTCTGTTTTGGGAAACAACCTTTGGATTGGGAATCCTCCACAGTGGGTCGACAAGTTCAAAGTTAGCAATTGCTTGTTGTTGAACATTCTGGCAGAGATGTATTACAGATCAGGGTCAACTGGCTGTTTATCTTCTATTCTGCAGTGCACTCTTTCTAAGTTTCTGTTGCCTCTAGATGCAAGTAGTGATGGATGGGATGAAACAATTAGTAGCTTGTGTGATCTTCTTAAGCAATATATCAAAATAAAGATAGAATCAGATATTGAAGAGATATATGTTTGCTTTCGTCTTCTTAAAAGGTTCACAATGAAGTCAAAACTTTTTTTAGAGGCATACAATGTTGTTTTCCCTTATCTCCAGGCTTCTGCTGGTGAGAATTATGGAGGAAGCTTGCAGCTTTCACATGCAAAGGAATAG 3165 0.4054 MMRHGGHFENYFSRHRVTHIICSNLPDSKIKNLRSFSGGLPVVKPTWVLDSVAANKLLSWIPYQLDQLANETRNQPKLSAFFALKSIPVFEDAVTHTTYPLVPETEDSVFKGGTSKDAVSSEGGQYLEYTRQSSGEIDDHQCENTNETIIEKPFSNDEKSSEIKMEEQSFSNQEEECSIKNELQSSPHRPSASVSSYYLDNARKESSSTTVVGCSNKGHSTLEDPNFVENYFKYSRLHFIGTWRNRYQKRFPRLSNEFKHTSSDLNASGVSQKNVIIHMDMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGIFVRDAKALCPHLVIFPYNFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEVMDSKEGDPELLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKALPGIGHVLEEKLRRRKVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQESKSIGAEVNWGVRFNDLKDSRHFLVNLCKEVTLRLKGCGVQGRTFTLKMKKRRKDAGEPAKYMGCGDCENLSHSMTVPLATDDVDVIQRIATQLFGFFHIDVKDIRGIGLQVSRLENADTAKQGHQRISIRSWLTSAPATNEELCKTSCLVRKERAVADGEKQSTDISLGQLSNDSKRPSLQMSPSSSNNEAPLNQVSELPALCDLDMGVLESLPPELLSEINDMYAGKLSDFIRKRKGKNENVSGTMCTTSYEIYEGAINNGKQLHCSIVPIRKTPVENKVEKTLDREIATENSLLQSSEVEKVKQYKIDEIQEVSVSGAVSLNVVDPASALEKSDLMPSSLSQVDISVLQQLPKEMWVDILEQLPVHRKPEHSSSAALDPLIANAQESLCFKHTENNSKSVDSVLGNNLWIGNPPQWVDKFKVSNCLLLNILAEMYYRSGSTGCLSSILQCTLSKFLLPLDASSDGWDETISSLCDLLKQYIKIKIESDIEEIYVCFRLLKRFTMKSKLFLEAYNVVFPYLQASAGENYGGSLQLSHAKE* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0736 1054 ProSiteProfiles UmuC domain profile. 276 457 IPR001126 GO:0006281
Vvi3g0736 1054 PIRSF REV1 1 1043 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Vvi3g0736 1054 Gene3D BRCT domain 1 65 IPR036420 -
Vvi3g0736 1054 ProSiteProfiles BRCT domain profile. 1 65 IPR001357 -
Vvi3g0736 1054 Gene3D - 225 261 - -
Vvi3g0736 1054 FunFam DNA repair protein REV1 293 347 - -
Vvi3g0736 1054 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 512 625 IPR036775 GO:0003684|GO:0006281
Vvi3g0736 1054 MobiDBLite consensus disorder prediction 676 705 - -
Vvi3g0736 1054 Gene3D - 512 635 IPR036775 GO:0003684|GO:0006281
Vvi3g0736 1054 Pfam impB/mucB/samB family 280 425 IPR001126 GO:0006281
Vvi3g0736 1054 FunFam DNA repair protein REV1 513 634 - -
Vvi3g0736 1054 MobiDBLite consensus disorder prediction 154 194 - -
Vvi3g0736 1054 MobiDBLite consensus disorder prediction 154 173 - -
Vvi3g0736 1054 PANTHER DNA REPAIR PROTEIN REV1 1 1047 - -
Vvi3g0736 1054 Coils Coil 156 176 - -
Vvi3g0736 1054 Gene3D - 276 436 IPR043128 -
Vvi3g0736 1054 Gene3D - 293 347 - -
Vvi3g0736 1054 MobiDBLite consensus disorder prediction 174 194 - -
Vvi3g0736 1054 Pfam impB/mucB/samB family C-terminal domain 513 633 IPR017961 GO:0003684|GO:0006281
Vvi3g0736 1054 CDD PolY_Rev1 227 627 - -
Vvi3g0736 1054 Gene3D - 448 502 - -
Vvi3g0736 1054 SUPERFAMILY DNA/RNA polymerases 271 507 IPR043502 -
Vvi3g0736 1054 FunFam DNA repair protein REV1 332 436 - -
Vvi3g0736 1054 MobiDBLite consensus disorder prediction 673 705 - -
Vvi3g0736 1054 SUPERFAMILY BRCT domain 1 80 IPR036420 -
Vvi3g0736 1054 CDD BRCT_Rev1 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0736 Vvi-Chr3 6481183 6502209 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0736 K03515 - vvi:100247553 2095.09