Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0711 ATGGCGGTAGCCGTTCTCCGCCGCCGATTTTTCCTCCAATCTCGACGGGAAACCACCGGGAAGGTTGGCGACATGTTCTGTATTTCAGCCCTGGATCAACAGCGGTCCTGCTTTGCCACCAGTAACGACGCCGTTTCCGAAGCGCACAAGAGCAAGAAGGGCAAATGGTTCACCTTGCCGGCGTTCACTCCCGTCGTCGACGCTTCGTCCTTGGGGAAAGTGCTTTCCGGACATCGTACGGACTTGAACACCGGTAATACCACCGCTGGAGCCTCTACGACGGCTTTGAAATGGGTGGTTCGGTGCTGTCCGCAACTGCCGAGGTCGCTCGTACAGAAGCTCTTTCGCTTGAGACAGGTTAGAAGAGAATCCTACAACATGATAACTTCTGATATTGGTGTTCAAAACCAAGAACATCGACTTAAAAGGGTGGCTGCCAAGGACTTGATGAACTTGGGAGATCAAATCCTTCTTCCTATCACAGTTGAAGAGTTTCCTTCGGAAAAACATGAGTACCATTGCAATGATGAAGAAATAAACTTTGTCCATAACCTTGAATTGTATAAGGATCCAGCCATTATTGTTGTCAATAAACCTCCGGGATTGCCTGTTCAGGGTGGCATTGGCATCAAAAGGAGTTTAGATGAACTGGCTGCAACTTATTTAAGATATGACTGCTCAGAACCCCCTCGACTAGTACACAGACTTGACAGAGATAGTAGTGGCATCTTGATCATGGGGAGGACACAAACAAGTGCTACAATTCTGCATTCCATATTTCGTGAGAAAACATTTGGAGCATCAAATAATGACATTGATACCAAGAAGAGAATTTTGCAAAGGAGGTATTGGGCACTTGTCATTGGTTCTCCAAGACGTCCAAGGGGATTAATTTCAGCACCATTAGGAAAGGTGGTGGTGGATGATGGAAAGTCTGAACGAATCACCATTGTTGACAATGTACAAACTATGTCATCTCAGCATGCAATTACAGAGTATCGGGTGATTAAATCTTCATGTCATGGTTACACATGGTTAGAGTTGTCTCCTCTCACTGGTAGAAAGCACCAGCTTCGAGTACACTGTGCTGAGGTATTGGGAACACCCATAGTTGGAGACTACAAATATGGATGGCAAGCTCATAGGAAGTGGAAGCAATTGTTTCAGTCTAATATTGAAAAGAACTTGGATGAAAATCTTTCCAATAGAAAGACACATCCTTTTGGCCTTGATTTGGAGAGTGGAAGTATCTTGGATAAACAGCCCCACCTGCATCTCCATTGTAAGCAAATGGTTTTGCCCAATGTTTCTCTGGCCTTGCAGAATTTGCAATTATCTGCAGAGTGTGATCTTTCAGAACTGGAAAGCCTCGAGTTTGTTGCTCCTTTGCCTTCACACATGCAAAGAAGTTGGGACATTTTGAATTCATGA 1431 0.45 MAVAVLRRRFFLQSRRETTGKVGDMFCISALDQQRSCFATSNDAVSEAHKSKKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEFPSEKHEYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQRSWDILNS* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0711 476 Gene3D Pseudouridine synthase 183 448 - -
Vvi3g0711 476 CDD PseudoU_synth_RluA_like 193 386 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi3g0711 476 SUPERFAMILY Pseudouridine synthase 185 475 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi3g0711 476 Pfam RNA pseudouridylate synthase 193 363 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi3g0711 476 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 87 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0711 Vvi-Chr3 6217557 6226884 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0711 - - vvi:100253686 953.74