Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0698 ATGAAGACAATCCAAACAACCCCCAAACCCTTCATCGACTTTCCCGCGCCCAATCACGGGCGAGACCATCGCAAAACCACTATAAAATGCATCATAGGCTCCTGTCTCACTTCCACTATCAGCTCAACCGTCCCTACGGCGCAGCTTAGCACGATCCACCTCCGGCATACAGCTATGGCCGCTGCGTCTTCATCGACTCTCTTTCCATCAAACAAGCTCTCTTCTAATTCTCTGTCACGGAAGCTATCGTTGGCCCCCGCCTTCTCTGTCGCCGTCGTGGTGCCCCGACGGCGTCGGTCGTTAGTGGTGGTGGCGACGGCCTTGGATGCGAAACCGACGGTTTTGGTTGCGGAAAAGCTGGGAGCGGCGGGGCTCGATCTGCTGAAAGATTTTGCTAACGTTGATTGCGCGTATAATCTGAGCCCGGAGGAGCTGTGCACCAAGATCTCGCTCTGCGACGCCTTGATCGTCCGTAGTGGAACCAAGGTGAGTCGAGAGGTGTTCGAGGCATCAAGCGGCCGTTTGAAGGTAGTCGGACGGGCTGGCGTAGGTATCGATAACGTGGATCTGGCCGCGGCGACAGAGCATGGGTGCCTTGTGGTGAATGCGCCCACGGCGAATACGGTTGCGGCGGCGGAGCATGGGATCGCTCTCCTAACGGCGATGGCGAGGAATGTTGCGCAGGCTGATGCGTCTGTGAAATCTGGGAAGTGGCAAAGGAACAAATATGTGGGTGTTTCTCTTGTTGGGAAAACGCTTGCTGTGATGGGGTTTGGTAAGGTTGGGTCAGAAGTTACCCGACGTGCCAAGGGGCTTGGTATGCATGTGATTGCACATGATCCATATGCAGCTGCAGACCGTGCCCGTGCAATAGGTGTGGAACTTGTGGGCTTTGATGAAGCCATATCAACTGCAGATTTCATATCACTTCATATGCCCCTTACTCCTGCTACGTCGAAGATGCTCAATGATGAAACTTTTGCCAAAATGAAGAAAGGAGTTCGGATAATTAATGTTGCTCGTGGGGGGGTAATTGATGAAGAAGCTCTTGTGAGGGCACTGGATGCTGGAATTGTTGCACAGGCTGCTCTTGATGTTTTCACAGAAGAGCCACCCCCAAAAGACAGCAAATTAATACTACATGAAAATGTAACTGTGACTCCTCATCTTGGTGCCAGCACTATGGAAGCTCAGGAAGGAGTAGCCATTGAGATAGCTGAAGCTGTTGTTGGAGCCTTAAAGGGGGAGCTTGCTGCTACTGCAGTCAATGCACCAATGGTTCCTGCAGAGGTTCTGTCAGAGCTGAAACCATTTGTTGAACTTGCTGAGAAACTTGGGAGGCTGGCTGTCCAGTTAGTATCCGGTGGAAGTGGTGTAAAGTCAGTGAAAGTGACATATGCTTCTGCCAGGGCTCCTGATGACCTTGACACAAGGCTACTCCGAGCCATGATCACTAAGGGTCTGATTGAGCCCATATCCAGTGTTTTTGTGAACTTGGTGAATGCTGATTTCTCTGCTAAACAGAGAGGACTCCGAATAACAGAAGAACGATCAATTCTAGATGGTTCACCTGAGAGTCCACTTGAGTTCATCCAGGTTCAGATTGCTAATGTGGAATCAAAATTTGCCAGTGCCATTTCTGAGTCTGGGGAGATTACAGTGGAGGGACGTGTCAAAGATGGGATTCCCCATTTGACAAAGGTAGGGTCTTTTGAAGTGGATGTGAGTTTGGAAGGTAGCATTATACTTTGCAGACAGGTAGATCAGCCGGGTATGATTGGAAAGGTTGGGAGCATTTTGGGGGAGGAGAACGTGAATGTGAGCTTCATGAGCGTTGGAAGAGTTGCGCCTCGGAAGCATGCTGTAATGGCTATTGGAGTGGATGAGCAACCTAGCAAGGTAACGTTGAAGAAGATTGGGGAGATTCCAGCAGTAGAAGAGTTTGTTTTCCTCAAGTTGTAA 1962 0.5046 MKTIQTTPKPFIDFPAPNHGRDHRKTTIKCIIGSCLTSTISSTVPTAQLSTIHLRHTAMAAASSSTLFPSNKLSSNSLSRKLSLAPAFSVAVVVPRRRRSLVVVATALDAKPTVLVAEKLGAAGLDLLKDFANVDCAYNLSPEELCTKISLCDALIVRSGTKVSREVFEASSGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKSGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVTRRAKGLGMHVIAHDPYAAADRARAIGVELVGFDEAISTADFISLHMPLTPATSKMLNDETFAKMKKGVRIINVARGGVIDEEALVRALDAGIVAQAALDVFTEEPPPKDSKLILHENVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLSELKPFVELAEKLGRLAVQLVSGGSGVKSVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFSAKQRGLRITEERSILDGSPESPLEFIQVQIANVESKFASAISESGEITVEGRVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRVAPRKHAVMAIGVDEQPSKVTLKKIGEIPAVEEFVFLKL* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0698 653 Gene3D - 207 389 - -
Vvi3g0698 653 SUPERFAMILY Serine metabolism enzymes domain 429 575 IPR029009 -
Vvi3g0698 653 CDD ACT_3PGDH-xct 582 653 - -
Vvi3g0698 653 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 330 346 IPR029753 -
Vvi3g0698 653 Gene3D - 428 579 IPR029009 -
Vvi3g0698 653 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 114 423 IPR006139 GO:0016616|GO:0051287
Vvi3g0698 653 FunFam D-3-phosphoglycerate dehydrogenase 207 389 - -
Vvi3g0698 653 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 301 323 IPR029753 -
Vvi3g0698 653 FunFam D-3-phosphoglycerate dehydrogenase 428 579 - -
Vvi3g0698 653 ProSiteProfiles ACT domain profile. 581 653 IPR002912 -
Vvi3g0698 653 Pfam ACT domain 581 642 IPR002912 -
Vvi3g0698 653 SUPERFAMILY ACT-like 571 650 IPR045865 -
Vvi3g0698 653 Gene3D - 580 653 - -
Vvi3g0698 653 Gene3D - 116 416 - -
Vvi3g0698 653 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 111 244 - -
Vvi3g0698 653 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 253 280 IPR029752 -
Vvi3g0698 653 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 434 539 IPR045626 -
Vvi3g0698 653 PANTHER FORMATE DEHYDROGENASE 1 112 417 - -
Vvi3g0698 653 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 210 392 IPR036291 -
Vvi3g0698 653 CDD PGDH_4 114 416 - -
Vvi3g0698 653 SMART AdoHcyase_NAD_2 241 395 IPR015878 -
Vvi3g0698 653 FunFam D-3-phosphoglycerate dehydrogenase, chloroplastic 580 653 - -
Vvi3g0698 653 FunFam D-3-phosphoglycerate dehydrogenase 2 chloroplastic 392 423 - -
Vvi3g0698 653 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 216 391 IPR006140 GO:0051287
Vvi3g0698 653 NCBIfam phosphoglycerate dehydrogenase 114 651 IPR006236 GO:0004617|GO:0006564
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0698 Vvi-Chr3 6060268 6064528 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0698 K00058 - vvi:100260655 1071.23