Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0694 ATGAGAGTTGTGAGAAAGTGGTCTCCAACTGGCCAAAGACCATGCACCACTGACATCCCTATTCTAATTTCAAAGACCCACGCCGAGGCTCAAGGTCCCACTCACTTCCCAACCCCACCACCCCAACGCCCCATTCTTCTCTTTCAAATACAAAAAGGAGATCGAGAGGTGATGCCATTGCTGCAATTTCTAGCTCTTCTCGCCATGTCTCACCTCTCTCTTCTGTTTCTCTTCTCCGTCTTCTCCGCCACCCATGCCCTCACTCTCCCCTCCGACGTCTCTGCTCTTCAATCCTTCAAAGCCTCCATTAAACCCTCCTCTGTTTCTCCTTGGTCATGCCTCGCTTCTTGGAACTTCTCCACCGATCCATGCTCTGTTCCTCGCCGGACTCATTTCACCTGTGGTATTTCTTGCTCCGCAGACTCCACCAGGGTGATATCAATCACTCTCGACCCTGCTGGATACGCCGGCGCTCTCTCTCCGGCCATAGCCAAACTTACCCAACTTACCGTCCTCGACCTCTCTGATAATTCCTTATCCGGGTATGTTCCAAGCGCACTTTCCTCTCTTTCCAACCTCCAAATCCTCACCCTCCGGTCCAACTCATTCTCTGGTCCTCTCCCTCAAGCCATTACCGCGATCAAGTCTCTTGAATCTCTCGACATTTCTCATAATTTTCTATCTGGGTCGCTCCCCAAAACCATGGTTTCTCTCTCCAGCTTGAGGAGACTCGATCTCAGCTTCAACAGGATTACGGGGACCCTCCCCAAGCTTCCGTCGTCCTTATCAGAACTCGCTCTCAGGAGCAATTCTCTATCTGGGTATCTCCTGAAATCGTCCTTCGACGGTTTAACTCGATTGGAAGTAGTCGAACTCAGCGCAAACGCCTTCACGGGGCCAATACAAAGCTGGTTCTTCCTCCTCCCTTCCCTGCAACAGGTCAATTTAGCCAACAACAGCTTCACCGGTCTCGCGATCTTGAAACCCACCGCCAGCGACCTCGTCGCCGTCGATCTGGGCTTCAACCAGATCAAAGGCTACGTTCCCACGAATTTCTCAGCCTTCCCTCTCCTCTCATCACTCTCGCTTCGCTACAACCAGTTGCGTGGCCCAATTCCGCTGGACTACAGCAAGAAGGAGACCCTAAAGAGACTATTCCTGGACGGGAACTTCTTGAACGGAAAAGCGCCTGTGGGATTCTTCTCCGGGTGGTCGGGGGTATCGGGGAGCTTGGGGGACAACTGCCTACAGAGCTGTCCGACATCGTCTCAGCTGTGCCTACCATCACAGAAACCCAACTCTATTTGCAAGCAAGCCTACGGAGGAAAACCAAGGTCATAG 1341 0.5242 MRVVRKWSPTGQRPCTTDIPILISKTHAEAQGPTHFPTPPPQRPILLFQIQKGDREVMPLLQFLALLAMSHLSLLFLFSVFSATHALTLPSDVSALQSFKASIKPSSVSPWSCLASWNFSTDPCSVPRRTHFTCGISCSADSTRVISITLDPAGYAGALSPAIAKLTQLTVLDLSDNSLSGYVPSALSSLSNLQILTLRSNSFSGPLPQAITAIKSLESLDISHNFLSGSLPKTMVSLSSLRRLDLSFNRITGTLPKLPSSLSELALRSNSLSGYLLKSSFDGLTRLEVVELSANAFTGPIQSWFFLLPSLQQVNLANNSFTGLAILKPTASDLVAVDLGFNQIKGYVPTNFSAFPLLSSLSLRYNQLRGPIPLDYSKKETLKRLFLDGNFLNGKAPVGFFSGWSGVSGSLGDNCLQSCPTSSQLCLPSQKPNSICKQAYGGKPRS* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0694 446 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 69 274 - -
Vvi3g0694 446 SMART LRR_typ_2 190 213 IPR003591 -
Vvi3g0694 446 SMART LRR_typ_2 166 189 IPR003591 -
Vvi3g0694 446 SMART LRR_typ_2 238 265 IPR003591 -
Vvi3g0694 446 SMART LRR_typ_2 308 334 IPR003591 -
Vvi3g0694 446 Gene3D Ribonuclease Inhibitor 259 427 IPR032675 -
Vvi3g0694 446 PRINTS Leucine-rich repeat signature 169 182 - -
Vvi3g0694 446 PRINTS Leucine-rich repeat signature 238 251 - -
Vvi3g0694 446 Gene3D Ribonuclease Inhibitor 90 258 IPR032675 -
Vvi3g0694 446 ProSiteProfiles Leucine-rich repeat profile. 240 262 IPR001611 GO:0005515
Vvi3g0694 446 FunFam Nuclear pore complex protein NUP107 90 257 - -
Vvi3g0694 446 SUPERFAMILY L domain-like 88 397 - -
Vvi3g0694 446 Pfam Leucine rich repeat 210 251 IPR001611 GO:0005515
Vvi3g0694 446 Pfam Leucine rich repeat 164 202 IPR001611 GO:0005515
Vvi3g0694 446 Pfam Leucine rich repeat N-terminal domain 90 125 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0694 Vvi-Chr3 6023040 6024380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0694 140 412 Receptor kinase-like Gene Family AT3G28040 32.270 2.86e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0694 - - vvi:100248682 834.713