Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0691 ATGGAAGGAGTATCCTACCAGCGTTTCCCAAAAATCAAGATCCGGGAAGTCAAGGACGACTACGCCAAGTTCGAGCTCCGTGAGACCGATGCCAGCATGGCCAACGCTCTCCGCCGTGTCATGATCGCCGAAGTTCCCACCGTTGCCATTGACCTTGTCGAAATCGAGGTTAACTCCTCTGTTCTCAATGACGAGTTCATCGCCCACCGACTCGGACTCATTCCTCTCACCAGTGAGCGAGCCATGGCCATGCGATTCTCTCGCGACTGTGACGCATGCGACGGTGACGGCCAGTGCGAGTTTTGTTCCGTCGAGTTCCATTTGCGCGCCAAATGCATGACCGACGAAACCCTTGATGTTACTAGCAAGGACCTCATCAGCTCCGACCATACTGTTGTCCCTGTTGACTTCTCCGATTCCTCTGGCTACGATTCCGCCGATAAGAAGGGAATTATAATTGTGAAGCTGCGGCGAGGGCAAGAACTGAGGCTGAGAGCTATTGCCAGAAAGGGGATTGGGAAGGACCACGCCAAATGGTCACCGGCGGCTACTGTTACTTTTATGTACGAGCCTGAGATTCATATCAATGAAGATTTGATGGAATCTTTGACGCTTGAGGAGAAAACAAGTTGGGTTGAGAGCAGTCCCACAAAAGTTTTCGACATTGATGCTAGTTCCCAACAGGTTGTTGTGGCTGATGCTGAGGCATACACTTATGATGATGAAGTGCTCAAGAAAGCAGAAGCTATGGGGAAGCCAGGGCTTGTGGAGATCTATGCCAAAGAAGACAGTTTTATATTCACAGTTGAATCTACTGGTGCAATCAAAGCTTCTCAGTTGGTGCTCAATGCAATAGATGTTCTTAAACAAAAGCTTGATGCAGTGCGGCTATCAGAGGATACGGTAGAAGCTGATGATCAATTTGGTGAACTCGGTGCTCATATGCGAGGAGGATGA 957 0.4943 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0691 318 SMART rpoldneu2 21 298 IPR011263 GO:0003899|GO:0006351
Vvi3g0691 318 FunFam DNA-directed RNA polymerase family protein 47 177 - -
Vvi3g0691 318 Gene3D - 12 291 IPR036603 GO:0006351|GO:0046983
Vvi3g0691 318 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 23 292 IPR011263 GO:0003899|GO:0006351
Vvi3g0691 318 PANTHER DNA-DIRECTED RNA POLYMERASE 5 316 - -
Vvi3g0691 318 SUPERFAMILY RBP11-like subunits of RNA polymerase 10 299 IPR036603 GO:0006351|GO:0046983
Vvi3g0691 318 CDD RNAP_II_RPB3 10 301 - -
Vvi3g0691 318 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 46 181 IPR036643 -
Vvi3g0691 318 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 35 75 IPR001514 GO:0003677|GO:0003899|GO:0006351
Vvi3g0691 318 Gene3D - 47 177 IPR036643 -
Vvi3g0691 318 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 11 299 IPR022842 GO:0003899|GO:0006351
Vvi3g0691 318 Pfam RNA polymerase Rpb3/RpoA insert domain 53 180 IPR011262 GO:0003899|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0691 Vvi-Chr3 5985597 5989135 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0691 K03011 - vvi:100258926 623.624